From 4a7dd845b8ad35105ca24b531d36989ae764cdd5 Mon Sep 17 00:00:00 2001
From: Jim Procter
Date: Wed, 3 Jul 2019 18:35:15 +0100
Subject: [PATCH] JAL-3111 more whatsNew tweaks
---
help/help/html/whatsNew.html | 21 ++++++++++-----------
1 file changed, 10 insertions(+), 11 deletions(-)
diff --git a/help/help/html/whatsNew.html b/help/help/html/whatsNew.html
index c5f4f75..8150b80 100755
--- a/help/help/html/whatsNew.html
+++ b/help/help/html/whatsNew.html
@@ -31,7 +31,7 @@
we've addressed many bugs, and also made some important changes in
the way the Jalview desktop is installed and launched.
- - The Jalview Launcher and Update System
+ - The Jalview Launcher and Update System.
Jalview's new installation model means you'll only need to
download and install Jalview once. After installation, Jalview
will automatically keep itself up to date. The launcher also sets
@@ -44,26 +44,25 @@
href="https://en.wikipedia.org/wiki/Three_Rings_Design">Three
Rings Design for Jalview's new over the air update system: Getdown.
- - VCF Support. Proteins and genomic contigs with
+
- VCF Support. Proteins and genomic contigs with
chromosomal location annotation (such as protein coding genes
retrieved from Ensembl) can be annotated with variants imported from a local VCF file.
- - Feature filters and attribute colourschemes. A new
+
- Feature filters and attribute colourschemes. A new
Feature Display
Settings dialog allows filters and feature attribute based
colourschemes to be constructed, and a new filters column
added to the Feature
Settings dialog. Jalview's sequence feature datamodel has also
been further optimised, and is now maintained as a separate
- library IntervalStoreJ
- - Alternative tables for CDS translation. The Translate as CDNA option now
+ library IntervalStoreJ (available at https://github.com/bartongroup/IntervalStoreJ)
+ - Alternative tables for CDS translation. The Translate as cDNA option now
offers alternative amino acid coding schemes.
- - PCA plots stored in Jalview Projects
The PCA plots stored in Jalview Projects. The PCA viewer user interface has
also been improved.
- - Backup files
Jalview will automatically
+ - Backup files. Jalview will automatically
create backups when overwriting existing files, and - unlike with
earlier versions, should Jalview crash during a save, the original
file will be unaffected. The JalviewJS web page.
+ web page. To find out more, open http://www.jalview.org/jalview-js/
+ in Chrome or Firefox.