From 4a7e8772fef83c8e669d99ebc3a121fb0b3199d2 Mon Sep 17 00:00:00 2001 From: jprocter Date: Fri, 17 Dec 2010 13:17:03 +0000 Subject: [PATCH] javadoc --- src/jalview/datamodel/SequenceGroup.java | 11 ++++++++--- 1 file changed, 8 insertions(+), 3 deletions(-) diff --git a/src/jalview/datamodel/SequenceGroup.java b/src/jalview/datamodel/SequenceGroup.java index f045555..7bb9670 100755 --- a/src/jalview/datamodel/SequenceGroup.java +++ b/src/jalview/datamodel/SequenceGroup.java @@ -440,7 +440,9 @@ public class SequenceGroup } /** - * Add s to this sequence group + * Add s to this sequence group. If aligment sequence is already contained in + * group, it will not be added again, but recalculation may happen if the flag + * is set. * * @param s * alignment sequence to be added @@ -794,9 +796,12 @@ public class SequenceGroup { return getSequencesInOrder(al, true); } + /** - * return an array representing the intersection of the group with al, optionally returning an array the size of al.getHeight() - * where nulls mark the non-intersected sequences + * return an array representing the intersection of the group with al, + * optionally returning an array the size of al.getHeight() where nulls mark + * the non-intersected sequences + * * @param al * @param trim * @return null or array -- 1.7.10.2