From 4abf93c290b4ecdf03f81786a98de0287fd2239f Mon Sep 17 00:00:00 2001
From: jprocter <Jim Procter>
Date: Fri, 11 Jul 2008 15:07:03 +0000
Subject: [PATCH] ensure annotationElements in non-graphical annotation
 objects do not automatically get values

---
 src/jalview/io/VamsasAppDatastore.java |    5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/src/jalview/io/VamsasAppDatastore.java b/src/jalview/io/VamsasAppDatastore.java
index 82e9fba..dbd0a63 100644
--- a/src/jalview/io/VamsasAppDatastore.java
+++ b/src/jalview/io/VamsasAppDatastore.java
@@ -628,7 +628,10 @@ public class VamsasAppDatastore
                 // of
                 // utf8
                 // translation
-                ae.addValue(aa[i].annotations[a].value);
+                if (an.isGraph())
+                {
+                  ae.addValue(aa[i].annotations[a].value);
+                }
                 ae.setPosition(a + 1);
                 if (aa[i].annotations[a].secondaryStructure != ' ')
                 {
-- 
1.7.10.2