From 4b65534cd7d7dad17375e16d38848a69f23882b4 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Thu, 13 Jan 2005 18:10:06 +0000
Subject: [PATCH] SequenceGroup is now an array

---
 src/jalview/gui/SeqCanvas.java |    4 +++-
 src/jalview/gui/SeqPanel.java  |   14 ++++++++++++++
 2 files changed, 17 insertions(+), 1 deletion(-)

diff --git a/src/jalview/gui/SeqCanvas.java b/src/jalview/gui/SeqCanvas.java
index 6639774..7f30c24 100755
--- a/src/jalview/gui/SeqCanvas.java
+++ b/src/jalview/gui/SeqCanvas.java
@@ -209,6 +209,7 @@ public class SeqCanvas extends JPanel
 
     SequenceI nextSeq;
     SequenceGroup group=null;
+    SequenceGroup [] groups=null;
     boolean inGroup=false; // are we in a defined group?
     boolean inRB=false; //Are we in a rubberband group?
     int sx=-1, sy=-1, ex=-1, ey=-1;
@@ -219,8 +220,9 @@ public class SeqCanvas extends JPanel
      nextSeq = av.getAlignment().getSequenceAt(i);
 
      group = av.alignment.findGroup( nextSeq );
+     groups = av.alignment.findAllGroups( nextSeq );
 
-     sr.drawSequence(g, nextSeq, group,x1,x2,
+     sr.drawSequence(g, nextSeq, groups,x1,x2,
                  (x1 - startx) * charWidth,
                  offset + AlignmentUtil.getPixelHeight(starty, i, av.getCharHeight()),
                  charWidth,charHeight,null, i);
diff --git a/src/jalview/gui/SeqPanel.java b/src/jalview/gui/SeqPanel.java
index 9dcebd2..468fadb 100755
--- a/src/jalview/gui/SeqPanel.java
+++ b/src/jalview/gui/SeqPanel.java
@@ -333,6 +333,20 @@ public class SeqPanel extends JPanel
             || stretchGroup.getEndRes()<res)
      {
        stretchGroup = null;
+
+       SequenceGroup[] allGroups = av.alignment.findAllGroups( (Sequence) av.
+           getAlignment().
+           getSequenceAt(seq));
+
+       if (allGroups != null)
+         for (int i = 0; i < allGroups.length; i++)
+           if (allGroups[i].getStartRes() <= res &&
+               allGroups[i].getEndRes() >= res)
+           {
+             stretchGroup = allGroups[i];
+             av.setRubberbandGroup(stretchGroup);
+             break;
+           }
      }
 
     if(stretchGroup==null)
-- 
1.7.10.2