From 4dd649b088b13205d9eff79b494158d67c63dc16 Mon Sep 17 00:00:00 2001
From: Ben Soares <b.soares@dundee.ac.uk>
Date: Wed, 11 Sep 2024 16:23:43 +0100
Subject: [PATCH] JAL-4460 Update currentFileFormat /after/ new format
 selection

---
 src/jalview/gui/AlignFrame.java |   33 ++++++++++++++++++---------------
 1 file changed, 18 insertions(+), 15 deletions(-)

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 797e7ec..c225afe 100644
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -1032,8 +1032,6 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
     return progressBar == null ? false : progressBar.operationInProgress();
   }
 
-  
-  
   /**
    * Sets the text of the status bar. Note that setting a null or empty value
    * will cause the status bar to be hidden, with possibly undesirable flicker
@@ -1211,12 +1209,12 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
                       .getString("label.select_file_format_before_saving"),
               MessageManager.getString("label.file_format_not_specified"),
               JvOptionPane.WARNING_MESSAGE);
-      currentFileFormat = chooser.getSelectedFormat();
       value = chooser.showSaveDialog(this);
       if (value != JalviewFileChooser.APPROVE_OPTION)
       {
         return;
       }
+      currentFileFormat = chooser.getSelectedFormat();
     }
 
     fileName = chooser.getSelectedFile().getPath();
@@ -3962,30 +3960,35 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
     }
 
     tp = new TreePanel(alignPanel, type, modelName, options);
-    
-    frameTitle = formCalculationTitle(tp.getPanelTitle(),onSelection,this.title);
-    
+
+    frameTitle = formCalculationTitle(tp.getPanelTitle(), onSelection,
+            this.title);
+
     Desktop.addInternalFrame(tp, frameTitle, 600, 500);
   }
 
   /**
    * 
-   * @param panelTitle - calculation name
-   * @param onSelection - true if a selection was analysed
-   * @param viewName - null or current view name
-   * @param title - alignment frame title
-   * @return <calculation Name> (?on region) from (?viewName of) alignment name 
+   * @param panelTitle
+   *          - calculation name
+   * @param onSelection
+   *          - true if a selection was analysed
+   * @param viewName
+   *          - null or current view name
+   * @param title
+   *          - alignment frame title
+   * @return <calculation Name> (?on region) from (?viewName of) alignment name
    */
-  public String formCalculationTitle(String panelTitle,
-          boolean onSelection, String title)
+  public String formCalculationTitle(String panelTitle, boolean onSelection,
+          String title)
   {
     String frameTitle = panelTitle;
-    
+
     frameTitle += (onSelection ? " on region" : "");
 
     frameTitle += " from ";
 
-    if (viewport.getViewName()!=null)
+    if (viewport.getViewName() != null)
     {
       frameTitle += viewport.getViewName() + " of ";
     }
-- 
1.7.10.2