From 4e488d7e3ee2b70b798fd91ae90546462c890212 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Thu, 12 Oct 2006 14:13:22 +0000
Subject: [PATCH] Overview may request index beyond alignment height

---
 src/jalview/datamodel/HiddenSequences.java |    3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/src/jalview/datamodel/HiddenSequences.java b/src/jalview/datamodel/HiddenSequences.java
index e244dd7..17a6c11 100755
--- a/src/jalview/datamodel/HiddenSequences.java
+++ b/src/jalview/datamodel/HiddenSequences.java
@@ -35,7 +35,6 @@ public class HiddenSequences
   {
     if(hiddenSequences==null)
     {
-      System.out.println("H is null");
       return 0;
     }
     int count = 0;
@@ -182,7 +181,7 @@ public class HiddenSequences
     int index = 0;
     int hiddenSeqs = 0;
     if(hiddenSequences.length<=alignmentIndex)
-      System.out.println(alignmentIndex+" "+hiddenSequences.length);
+      alignmentIndex = hiddenSequences.length-1;
 
     while(index <= alignmentIndex)
     {
-- 
1.7.10.2