From 4e5df4ede3c4ee5918f8b967c1595982865e9b5f Mon Sep 17 00:00:00 2001
From: jprocter <Jim Procter>
Date: Fri, 29 Aug 2008 11:02:29 +0000
Subject: [PATCH] pass OutOfMemory errors upstream from EBI fetch client

---
 src/jalview/ws/ebi/EBIFetchClient.java |   11 +++++++----
 1 file changed, 7 insertions(+), 4 deletions(-)

diff --git a/src/jalview/ws/ebi/EBIFetchClient.java b/src/jalview/ws/ebi/EBIFetchClient.java
index 683f465..4fc0900 100644
--- a/src/jalview/ws/ebi/EBIFetchClient.java
+++ b/src/jalview/ws/ebi/EBIFetchClient.java
@@ -119,9 +119,10 @@ public class EBIFetchClient
   }
 
 
-  public File fetchDataAsFile(String ids, String f, String s)
+  public File fetchDataAsFile(String ids, String f, String s) throws OutOfMemoryError
   {
     String[] data = fetchData(ids, f, s);
+    // TODO: after JV 2.4 - test data==null and pass error(s) back up if possible (OutOfMemoryErrors are usual problem)
     File outFile = null;
     try
     {
@@ -150,7 +151,7 @@ public class EBIFetchClient
    *
    * @return Raw string array result of query set
    */
-  public String[] fetchData(String ids, String f, String s)
+  public String[] fetchData(String ids, String f, String s) throws OutOfMemoryError
   {
     // Need to split
     // ids of the form uniprot:25KD_SARPE;ADHR_DROPS;
@@ -183,7 +184,7 @@ public class EBIFetchClient
     return fetchBatch(querystring.toString(), db, f, s);
   }
 
-  public String[] fetchBatch(String ids, String db, String f, String s)
+  public String[] fetchBatch(String ids, String db, String f, String s) throws OutOfMemoryError
   {
     // max 50 ids can be added at one time
     try
@@ -214,10 +215,12 @@ public class EBIFetchClient
       }
       catch (OutOfMemoryError er)
       {
+        
         System.out.println("OUT OF MEMORY DOWNLOADING QUERY FROM " + db + ":\n" +
                            ids);
+        throw er;
       }
-      return null;
+      // return null;
     }
     catch (Exception ex)
     {
-- 
1.7.10.2