From 4efe5abda9af7f075953aa056d6530fe4f4c17db Mon Sep 17 00:00:00 2001 From: "cmzmasek@gmail.com" Date: Fri, 28 Sep 2012 01:24:34 +0000 Subject: [PATCH] in progress --- forester/ruby/evoruby/exe/run_phylo_pipeline.rb | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/forester/ruby/evoruby/exe/run_phylo_pipeline.rb b/forester/ruby/evoruby/exe/run_phylo_pipeline.rb index a36f56a..d09655f 100755 --- a/forester/ruby/evoruby/exe/run_phylo_pipeline.rb +++ b/forester/ruby/evoruby/exe/run_phylo_pipeline.rb @@ -27,11 +27,13 @@ module Evoruby def run unless ARGV.length == 4 + puts puts "arguments are: [inputfile].fasta [hmm-name] [min-length] [neg e-value exponent]" + puts exit end - pfam = "/home/czmasek/DATA/PFAM/PFAM260/" + pfam = "/home/czmasek/DATA/PFAM/PFAM260X/" hmmscan = "/home/czmasek/SOFTWARE/HMMER/hmmer-3.0/src/hmmscan" hmmsearch = "/home/czmasek/SOFTWARE/HMMER/hmmer-3.0/src/hmmsearch" hsp = "/home/czmasek/SOFTWARE/FORESTER/DEV/forester/forester/ruby/evoruby/exe/hsp.rb" -- 1.7.10.2