From 510da6a73729c963b2099ace612ad4fe25be7a8b Mon Sep 17 00:00:00 2001
From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Tue, 4 Dec 2012 11:44:42 +0000
Subject: [PATCH] JAL-1214 todo

---
 src/MCview/PDBfile.java |    1 +
 1 file changed, 1 insertion(+)

diff --git a/src/MCview/PDBfile.java b/src/MCview/PDBfile.java
index 6a61f6a..2dc9e1a 100755
--- a/src/MCview/PDBfile.java
+++ b/src/MCview/PDBfile.java
@@ -241,6 +241,7 @@ public class PDBfile extends jalview.io.AlignFile
   private void processPdbFileWithAnnotate3d(ArrayList<SequenceI> rna) throws Exception {
 //    System.out.println("this is a PDB format and RNA sequence");
     Annotate3D an3d = new Annotate3D();
+    // TODO: use the PDB ID of the structure if one is available, to save bandwidth and avoid uploading the whole structure to the service
     AlignmentI al = an3d.getRNAMLFor(new FileParse(getDataName(),type));
     replaceMatchingSeqsWith(rna, al, AlignSeq.DNA);
   }
-- 
1.7.10.2