From 53d9a401f21afe1e80e0cee72a964927a15d8ab7 Mon Sep 17 00:00:00 2001
From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Wed, 15 Mar 2017 12:47:36 +0000
Subject: [PATCH] JAL-2442 applet feature transparency also on overview or
 structure

---
 src/jalview/appletgui/FeatureSettings.java |    3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/src/jalview/appletgui/FeatureSettings.java b/src/jalview/appletgui/FeatureSettings.java
index 2c454a4..1b9fbf9 100755
--- a/src/jalview/appletgui/FeatureSettings.java
+++ b/src/jalview/appletgui/FeatureSettings.java
@@ -696,8 +696,7 @@ public class FeatureSettings extends Panel implements ItemListener,
   public void adjustmentValueChanged(AdjustmentEvent evt)
   {
     fr.setTransparency((100 - transparency.getValue()) / 100f);
-    ap.seqPanel.seqCanvas.repaint();
-
+    ap.paintAlignment(true);
   }
 
   class MyCheckbox extends Checkbox
-- 
1.7.10.2