From 53ff06f7f5e6f8c6d1f594f19a3df90153ead765 Mon Sep 17 00:00:00 2001
From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Wed, 24 May 2017 11:26:11 +0100
Subject: [PATCH] JAL-2542 correct adjustment of sequence features for
 flanking sequence

---
 src/jalview/ws/DBRefFetcher.java |    2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/jalview/ws/DBRefFetcher.java b/src/jalview/ws/DBRefFetcher.java
index fd511dc..493a13c 100644
--- a/src/jalview/ws/DBRefFetcher.java
+++ b/src/jalview/ws/DBRefFetcher.java
@@ -705,7 +705,7 @@ public class DBRefFetcher implements Runnable
                */
               int start = sequenceStart;
               int end = sequence.getEnd();
-              int startShift = 1 - absStart - start;
+              final int startShift = absStart - start + 1;
 
               if (startShift != 0)
               {
-- 
1.7.10.2