From 55d54ccaf45b2889a86ed31b19977eda8c263420 Mon Sep 17 00:00:00 2001
From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Wed, 19 Oct 2011 18:25:37 +0100
Subject: [PATCH] use List rather than Vector

---
 src/jalview/analysis/Conservation.java |    4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/src/jalview/analysis/Conservation.java b/src/jalview/analysis/Conservation.java
index 8e3b6e4..5c26ac4 100755
--- a/src/jalview/analysis/Conservation.java
+++ b/src/jalview/analysis/Conservation.java
@@ -85,7 +85,7 @@ public class Conservation
    *          end residue position
    */
   public Conservation(String name, Hashtable propHash, int threshold,
-          Vector sequences, int start, int end)
+          List<SequenceI> sequences, int start, int end)
   {
     this.name = name;
     this.propHash = propHash;
@@ -102,7 +102,7 @@ public class Conservation
     try {
     for (s = 0; s < sSize; s++)
     {
-      sarray[s] = (SequenceI) sequences.elementAt(s);
+      sarray[s] = (SequenceI) sequences.get(s);
       if (sarray[s].getLength() > maxLength)
       {
         maxLength = sarray[s].getLength();
-- 
1.7.10.2