From 566113028e37ad49c91f7f87238658ed5019d101 Mon Sep 17 00:00:00 2001 From: pvtroshin Date: Wed, 9 Feb 2011 11:04:49 +0000 Subject: [PATCH] Disable jronn parameter git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3723 e3abac25-378b-4346-85de-24260fe3988d --- conf/Executable.properties | 2 +- conf/settings/JronnParameters.xml | 5 +++++ datamodel/compbio/data/sequence/SequenceUtil.java | 1 + 3 files changed, 7 insertions(+), 1 deletion(-) diff --git a/conf/Executable.properties b/conf/Executable.properties index 99b9c6c..fcd6057 100644 --- a/conf/Executable.properties +++ b/conf/Executable.properties @@ -65,7 +65,7 @@ local.jronn.bin.windows=D:\\Java\\jdk1.6.0_14\\bin\\java.exe local.jronn.bin=/sw/java/latest/bin/java cluster.jronn.bin=/sw/java/latest/bin/java jronn.jar.file=binaries/jronn3.1.jar -jronn.parameters.file=conf/settings/JronnParameters.xml +# jronn.parameters.file=conf/settings/JronnParameters.xml jronn.limits.file=conf/settings/JronnLimits.xml #TODO jronn.jvm.options=-Xms32M -Xmx512M jronn.cluster.cpunum=4 diff --git a/conf/settings/JronnParameters.xml b/conf/settings/JronnParameters.xml index 27e7a86..bfe02e6 100644 --- a/conf/settings/JronnParameters.xml +++ b/conf/settings/JronnParameters.xml @@ -1,4 +1,8 @@ + + \ No newline at end of file diff --git a/datamodel/compbio/data/sequence/SequenceUtil.java b/datamodel/compbio/data/sequence/SequenceUtil.java index 7e6c672..754cf5f 100644 --- a/datamodel/compbio/data/sequence/SequenceUtil.java +++ b/datamodel/compbio/data/sequence/SequenceUtil.java @@ -365,6 +365,7 @@ public final class SequenceUtil { infasta.close(); return seqs; } + private static float[] convertToNumber(String[] annotValues) throws UnknownFileFormatException { float[] annotation = new float[annotValues.length]; -- 1.7.10.2