From 57adc61c263418567e382e0969582eb2887841bb Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Wed, 23 Apr 2014 17:15:04 +0100 Subject: [PATCH] JAL-1486 todo for 2.8.2 release --- src/jalview/io/FormatAdapter.java | 1 + 1 file changed, 1 insertion(+) diff --git a/src/jalview/io/FormatAdapter.java b/src/jalview/io/FormatAdapter.java index 0238073..6d77acc 100755 --- a/src/jalview/io/FormatAdapter.java +++ b/src/jalview/io/FormatAdapter.java @@ -197,6 +197,7 @@ public class FormatAdapter extends AppletFormatAdapter { // TODO consider using AlignmentView to prune to visible region // TODO prune sequence annotation and groups to visible region + // TODO: JAL-1486 - set start and end for output correctly. basically, AlignmentView.getVisibleContigs does this. Alignment alv = new Alignment(replaceStrings( alignment.getSequencesArray(), omitHidden)); AlignmentAnnotation[] ala = alignment.getAlignmentAnnotation(); -- 1.7.10.2