From 57c7779af159f50ed5d512e0e9ebf70801541ae0 Mon Sep 17 00:00:00 2001 From: jprocter Date: Wed, 7 Nov 2012 17:07:05 +0000 Subject: [PATCH] JAL-1201 tweak layout for applet page and allow monospace 
 tags

---
 examples/applets.html  |  339 ++++++++++++++++++++++++------------------------
 examples/css/style.css |   30 ++++-
 2 files changed, 194 insertions(+), 175 deletions(-)

diff --git a/examples/applets.html b/examples/applets.html
index b1d2f83..9437aed 100755
--- a/examples/applets.html
+++ b/examples/applets.html
@@ -139,183 +139,176 @@ document.onclick = mclose;
 
 
 
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+ 

 
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JalviewLite is a web based version of Jalview, which runs as a Java applet in or on a web page. It's one of the easiest ways of providing an interactive
-          display for precalculated alignments, features and annotations files.
-          It lacks some functionality available in the Jalview Desktop, however, such
-          as making images, saving files, and running web service jobs. This is mostly due to security
-          restrictions imposed on applets.

-        
For more information on how to use the applet in your
-          website, see full list of applet
-          parameters.

-        
 Pressing one of the buttons below will load up JalviewLite, a cut down version
-          of Jalview, which runs within your web browser. 

-        
 Ferredoxins, chloroplast precursor related UniRef50
-          cluster

-          (15 sequences x 150 residues)

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-                      User Defined Colours, loads an associated Newick
-                      format tree file which is used to sort the alignment, and group consensus and sequence logos are shown below the alignment.

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-                       Displays a features file on the alignment

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-                       Associates PDB file 1GAQ with sequence FER1_MAIZE

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-												Displays a Multiple Sequence Alignment
-												Based JNet Prediction for a Sequence

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-                       Displays an RFAM RNA fold family with secondary structure annotation

-        

-

+        
+         
+          
+           
+            
+             
+       
+        
+         
+          
+       
+        
+       
+      Associates PDB file 1GAQ with sequence
+       FER1_MAIZE
+     
+     
+      
+       
+        
+         
+          
+           
+            
+             
+              
+               
+                
+       
+        
+         
+          
+       
+       
+      Displays a Multiple Sequence Alignment
+       Based JNet Prediction for a Sequence
+     
+    
+    

+    
RF00031 RFAM Alignment with per seqeunce secondary
+     structure

+    

+    
+     
+      
+      
+     
+    

+       
+        
+         
+          
+           
+            
+             
+              
+               
+       
+       Displays an RFAM RNA fold family with
+       secondary structure annotation

+   

+  

+ 
 
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