From 57d6a9e73c82ce2663a56dde4e70d997198f9e12 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Wed, 15 Dec 2004 17:14:48 +0000
Subject: [PATCH] SliderPanel added, edit is by mouse click

---
 src/jalview/gui/AlignFrame.java |   47 +++++++++++++++++++--------------------
 1 file changed, 23 insertions(+), 24 deletions(-)

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index a50164a..ec75ee5 100755
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -21,6 +21,7 @@ import java.awt.*;
 import java.awt.event.*;
 import java.awt.print.*;
 import javax.swing.*;
+import javax.swing.event.*;
 import java.util.*;
 
 public class AlignFrame extends GAlignFrame
@@ -189,11 +190,6 @@ public class AlignFrame extends GAlignFrame
      alignPanel.RefreshPanels();
   }
 
-  protected void modifyAlignmentMenuItem_actionPerformed(ActionEvent e)
-  {
-    viewport.groupDefiningMode = !modifyAlignmentMenuItem.isSelected();
-  }
-
 
   public void groupsMenuItem_actionPerformed(ActionEvent e)
   {
@@ -204,10 +200,6 @@ public class AlignFrame extends GAlignFrame
     frame.setResizable(false);
   }
 
-  public void groupEditingMenuItem_actionPerformed(ActionEvent e)
-  {
-    viewport.setGroupEdit( groupEditingMenuItem.isSelected() );
-  }
 
   public void selectAllSequenceMenuItem_actionPerformed(ActionEvent e)
   {
@@ -466,7 +458,8 @@ public class AlignFrame extends GAlignFrame
 
   public void clustalColour_actionPerformed(ActionEvent e)
   {
-   // alignPanel.setColourScheme( new ClustalxColourScheme() );
+    viewport.setGlobalColourScheme(new ClustalxColourScheme( ));
+    alignPanel.setColourScheme(  );
   }
 
   public void zappoColour_actionPerformed(ActionEvent e)
@@ -519,24 +512,30 @@ public class AlignFrame extends GAlignFrame
   protected  void conservationMenuItem_actionPerformed(ActionEvent e)
   {
     viewport.setConservationSelected(conservationMenuItem.isSelected());
-    conservationColourIncMenuItem.setEnabled( conservationMenuItem.isSelected() );
     alignPanel.setColourScheme();
-  }
 
-  public void conservationColourIncMenuItem_actionPerformed(ActionEvent e)
- {
-   ConservationIncrementPanel cip = new ConservationIncrementPanel(viewport, alignPanel);
-   JInternalFrame frame = new JInternalFrame();
-   frame.setContentPane(cip);
-   Desktop.addInternalFrame(frame, "Conservation Colour Increment", 400,90);
-   frame.setMaximizable(false);
- }
+    if(conservationMenuItem.isSelected())
+    {
+      SliderPanel sp = new SliderPanel(alignPanel, 30, true, viewport.getGlobalColourScheme());
+      JInternalFrame frame = new JInternalFrame();
+      frame.setContentPane(sp);
+      Desktop.addInternalFrame(frame, "Conservation Colour Increment", 400, 90);
+      frame.setMaximizable(false);
+    }
+  }
 
 
-  public void abovePIDColour_actionPerformed(ActionEvent e)
+  public void abovePIDThreshold_actionPerformed(ActionEvent e)
   {
-    viewport.setGlobalColourScheme(new PIDColourScheme());
-    alignPanel.setColourScheme( );
+    if(abovePIDThreshold.isSelected())
+    {
+      SliderPanel sp = new SliderPanel(alignPanel, 70, false,
+                                       viewport.getGlobalColourScheme());
+      JInternalFrame frame = new JInternalFrame();
+      frame.setContentPane(sp);
+      Desktop.addInternalFrame(frame, "Percentage Identity Threshold", 400, 90);
+      frame.setMaximizable(false);
+    }
   }
 
 
@@ -553,7 +552,7 @@ public class AlignFrame extends GAlignFrame
 
   public void PIDColour_actionPerformed(ActionEvent e)
   {
-    viewport.setGlobalColourScheme(new PIDColourScheme() );
+    viewport.setGlobalColourScheme( new PIDColourScheme() );
     alignPanel.setColourScheme( );
   }
 
-- 
1.7.10.2