From 582d39cb05dfbb5f956f74d4a97a17d9f63b0786 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Mon, 13 Nov 2006 11:08:50 +0000
Subject: [PATCH] Sequence colour moved to viewport

---
 src/jalview/datamodel/Alignment.java |    9 ---------
 src/jalview/datamodel/Sequence.java  |   21 ---------------------
 src/jalview/datamodel/SequenceI.java |   15 ---------------
 3 files changed, 45 deletions(-)

diff --git a/src/jalview/datamodel/Alignment.java b/src/jalview/datamodel/Alignment.java
index 288c28a..71e76af 100755
--- a/src/jalview/datamodel/Alignment.java
+++ b/src/jalview/datamodel/Alignment.java
@@ -269,15 +269,6 @@ public class Alignment implements AlignmentI
     public void deleteAllGroups()
     {
         groups.removeAllElements();
-
-        int i = 0;
-
-        while (i < sequences.size())
-        {
-            SequenceI s = getSequenceAt(i);
-            s.setColor(java.awt.Color.white);
-            i++;
-        }
     }
 
     /**    */
diff --git a/src/jalview/datamodel/Sequence.java b/src/jalview/datamodel/Sequence.java
index 8031202..e2fc057 100755
--- a/src/jalview/datamodel/Sequence.java
+++ b/src/jalview/datamodel/Sequence.java
@@ -37,7 +37,6 @@ public class Sequence implements SequenceI
   String description;
   int start;
   int end;
-  Color color = Color.white;
   Vector pdbIds;
   String vamsasId;
   DBRefEntry[] dbrefs;
@@ -597,26 +596,6 @@ public class Sequence implements SequenceI
     insertCharAt(i, 1, c);
   }
 
-  /**
-   * DOCUMENT ME!
-   *
-   * @param c DOCUMENT ME!
-   */
-  public void setColor(Color c)
-  {
-    this.color = c;
-  }
-
-  /**
-   * DOCUMENT ME!
-   *
-   * @return DOCUMENT ME!
-   */
-  public Color getColor()
-  {
-    return color;
-  }
-
   public String getVamsasId()
   {
     return vamsasId;
diff --git a/src/jalview/datamodel/SequenceI.java b/src/jalview/datamodel/SequenceI.java
index d4ac599..a8327cf 100755
--- a/src/jalview/datamodel/SequenceI.java
+++ b/src/jalview/datamodel/SequenceI.java
@@ -198,21 +198,6 @@ public interface SequenceI
     public void insertCharAt(int i, int length, char c);
 
 
-
-    /**
-     * DOCUMENT ME!
-     *
-     * @param c DOCUMENT ME!
-     */
-    public void setColor(Color c);
-
-    /**
-     * DOCUMENT ME!
-     *
-     * @return DOCUMENT ME!
-     */
-    public Color getColor();
-
     /**
      * DOCUMENT ME!
      *
-- 
1.7.10.2