From 58a551ce8b3c82989a4b26cacafd828f10e05e6d Mon Sep 17 00:00:00 2001 From: jprocter Date: Wed, 28 Apr 2010 10:21:33 +0000 Subject: [PATCH] make groups function --- help/html/menus/alwselect.html | 60 +++++++++++++++++++++------------------- 1 file changed, 31 insertions(+), 29 deletions(-) diff --git a/help/html/menus/alwselect.html b/help/html/menus/alwselect.html index 34438cd..3b3918c 100644 --- a/help/html/menus/alwselect.html +++ b/help/html/menus/alwselect.html @@ -1,29 +1,31 @@ - - -

Alignment Window Select Menu

Find... (Control F)
- Opens the Find dialog box to search for residues, sequence name or residue - position within the alignment and create new sequence features from the queries. - -
Select All (Control A)
- Selects all the sequences and residues in the alignment.
- Use <CTRL> and A (<APPLE> and A on a MacOSX) to select all.
Deselect All (Escape)
- Removes the current selection box (red dashed box) from the - alignment window. All selected sequences, residues and marked columns - will be deselected.
- Use <ESCAPE> to deselect all.
Invert Sequence Selection (Control I)
- Any sequence ids currently not selected will replace the - current selection.
Invert Column Selection (Control Alt I)
- Any columns currently not selected will replace the current - column selection.
Undefine Groups (Control U)
- The alignment will be reset with no defined groups.
- WARNING: This cannot be undone.

- - + + +

Alignment Window Select Menu

Find... (Control F)
+ Opens the Find dialog box to search for residues, sequence name or residue + position within the alignment and create new sequence features from the queries. + +
Select All (Control A)
+ Selects all the sequences and residues in the alignment.
+ Use <CTRL> and A (<APPLE> and A on a MacOSX) to select all.
Deselect All (Escape)
+ Removes the current selection box (red dashed box) from the + alignment window. All selected sequences, residues and marked columns + will be deselected.
+ Use <ESCAPE> to deselect all.
Invert Sequence Selection (Control I)
+ Any sequence ids currently not selected will replace the + current selection.
Invert Column Selection (Control Alt I)
+ Any columns currently not selected will replace the current + column selection.
Undefine Groups (Control U)
+ The alignment will be reset with no defined groups.
+ WARNING: This cannot be undone.
Make Groups
+ The currently selected groups of the alignment will be subdivided according to the contents of the currently selected region.
Use this to subdivide an alignment based on the different combinations of residues observed at specific positions. (new in jalview 2.5)

+ + -- 1.7.10.2