From 5960ee8bfc53ed73be59d00dffc52bf4714e3b0e Mon Sep 17 00:00:00 2001
From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Mon, 30 May 2011 07:35:37 +0100
Subject: [PATCH] bug for clients using NJTree directly - pwtype should be
 valid score matrix or PID, otherwise it is set by default
 to BLOSUM62

---
 src/jalview/analysis/NJTree.java |    2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)
 mode change 100755 => 100644 src/jalview/analysis/NJTree.java

diff --git a/src/jalview/analysis/NJTree.java b/src/jalview/analysis/NJTree.java
old mode 100755
new mode 100644
index e11e1f5..e5c1643
--- a/src/jalview/analysis/NJTree.java
+++ b/src/jalview/analysis/NJTree.java
@@ -237,7 +237,7 @@ public class NJTree
     {
       if (ResidueProperties.getScoreMatrix(pwtype) == null)
       {
-        type = "BLOSUM62";
+        pwtype = "BLOSUM62";
       }
     }
 
-- 
1.7.10.2