From 5986040b8a7172172b8650e6a4c717af5bca277b Mon Sep 17 00:00:00 2001
From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Fri, 17 Aug 2018 14:57:49 +0100
Subject: [PATCH] JAL-3048 remove obsolete way of handling dialogs in
 JalviewJS

---
 src/jalview/gui/AlignFrame.java    |   31 +------------------------------
 src/jalview/jbgui/GAlignFrame.java |   17 +----------------
 2 files changed, 2 insertions(+), 46 deletions(-)

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 5b9df68..a59cc13 100644
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -157,8 +157,7 @@ import javax.swing.SwingUtilities;
  * @version $Revision$
  */
 public class AlignFrame extends GAlignFrame implements DropTargetListener,
-        IProgressIndicator, AlignViewControllerGuiI, ColourChangeListener,
-        PropertyChangeListener
+        IProgressIndicator, AlignViewControllerGuiI, ColourChangeListener
 {
 
   public static final int DEFAULT_WIDTH = 700;
@@ -334,34 +333,6 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
     init();
   }
 
-  @Override
-  public void propertyChange(PropertyChangeEvent evt)
-  {
-    Desktop.getDesktop().propertyChange(evt);
-  }
-
-  /**
-   * BH 2018
-   * 
-   * @return true if we have any features
-   */
-  @Override
-  protected boolean haveAlignmentFeatures()
-  {
-    AlignmentI alignment = getViewport().getAlignment();
-
-    for (int i = 0; i < alignment.getHeight(); i++)
-    {
-      SequenceI seq = alignment.getSequenceAt(i);
-      for (String group : seq.getFeatures().getFeatureGroups(true))
-      {
-        if (group != null)
-          return true;
-      }
-    }
-    return false;
-  }
-
   /**
    * initalise the alignframe from the underlying viewport data and the
    * configurations
diff --git a/src/jalview/jbgui/GAlignFrame.java b/src/jalview/jbgui/GAlignFrame.java
index 3a6e603..69031d1 100755
--- a/src/jalview/jbgui/GAlignFrame.java
+++ b/src/jalview/jbgui/GAlignFrame.java
@@ -285,16 +285,7 @@ public class GAlignFrame extends JInternalFrame
     addMenuActionAndAccelerator(keyStroke, closeMenuItem, al);
 
     JMenu editMenu = new JMenu(MessageManager.getString("action.edit"));
-    JMenu viewMenu = new JMenu(MessageManager.getString("action.view")) {
-      
-      public void setPopupMenuVisible(boolean b) {
-        if (b) {
-          openFeatureSettings.setEnabled(haveAlignmentFeatures());
-        }
-        super.setPopupMenuVisible(b);
-      }
-
-    };
+    JMenu viewMenu = new JMenu(MessageManager.getString("action.view"));
     JMenu annotationsMenu = new JMenu(
             MessageManager.getString("action.annotations"));
     JMenu showMenu = new JMenu(MessageManager.getString("action.show"));
@@ -1899,12 +1890,6 @@ public class GAlignFrame extends JInternalFrame
     // selectMenu.add(listenToViewSelections);
   }
 
-  protected boolean haveAlignmentFeatures()
-  {
-    // because gAlignFrame is not an abstract class  -- see AlignFrame
-    return false;
-  }
-
   protected void loadVcf_actionPerformed()
   {
   }
-- 
1.7.10.2