From 59bcebdf52d535ff621840b2d836ecfc0f605ec1 Mon Sep 17 00:00:00 2001
From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Wed, 1 Jul 2015 09:13:22 +0100
Subject: [PATCH] JAL-1619 align the added sequences to match what they are
 added to

---
 src/jalview/gui/AlignViewport.java |    1 +
 1 file changed, 1 insertion(+)

diff --git a/src/jalview/gui/AlignViewport.java b/src/jalview/gui/AlignViewport.java
index cf82bfe..9eaee20 100644
--- a/src/jalview/gui/AlignViewport.java
+++ b/src/jalview/gui/AlignViewport.java
@@ -909,6 +909,7 @@ public class AlignViewport extends AlignmentViewport implements
 
     if (openSplitPane)
     {
+      al.alignAs(thisAlignment);
       protein = openSplitFrame(newAlignFrame, thisAlignment,
               protein.getCodonFrames());
     }
-- 
1.7.10.2