From 59e104c59cd667a8e8f9095d8b37af7f5f36c6f8 Mon Sep 17 00:00:00 2001 From: gmungoc Date: Tue, 28 Mar 2017 16:40:38 +0100 Subject: [PATCH 1/1] JAL-2416 format matrix more readably --- resources/scoreModel/dna.scm | 26 ++++++++++++-------------- 1 file changed, 12 insertions(+), 14 deletions(-) diff --git a/resources/scoreModel/dna.scm b/resources/scoreModel/dna.scm index c490931..0d7cbc1 100644 --- a/resources/scoreModel/dna.scm +++ b/resources/scoreModel/dna.scm @@ -13,17 +13,15 @@ ScoreMatrix DNA # # Values may be integer or floating point, delimited by tab, space, comma or combinations # - A C G T U I X R Y N - -A 10 -8 -8 -8 -8 1 1 1 -8 1 1 -C -8 10 -8 -8 -8 1 1 -8 1 1 1 -G -8 -8 10 -8 -8 1 1 1 -8 1 1 -T -8 -8 -8 10 10 1 1 -8 1 1 1 -U -8 -8 -8 10 10 1 1 -8 1 1 1 -I 1 1 1 1 1 10 0 0 0 1 1 -X 1 1 1 1 1 0 10 0 0 1 1 -R 1 -8 1 -8 -8 0 0 10 -8 1 1 -Y -8 1 -8 1 1 0 0 -8 10 1 1 -N 1 1 1 1 1 1 1 1 1 10 1 -- 1 1 1 1 1 1 1 1 1 1 1 -# -# A C G T U I X R Y N - + A C G T U I X R Y N - +A 10 -8 -8 -8 -8 1 1 1 -8 1 1 +C -8 10 -8 -8 -8 1 1 -8 1 1 1 +G -8 -8 10 -8 -8 1 1 1 -8 1 1 +T -8 -8 -8 10 10 1 1 -8 1 1 1 +U -8 -8 -8 10 10 1 1 -8 1 1 1 +I 1 1 1 1 1 10 0 0 0 1 1 +X 1 1 1 1 1 0 10 0 0 1 1 +R 1 -8 1 -8 -8 0 0 10 -8 1 1 +Y -8 1 -8 1 1 0 0 -8 10 1 1 +N 1 1 1 1 1 1 1 1 1 10 1 +- 1 1 1 1 1 1 1 1 1 1 1 -- 1.7.10.2