From 5a022fd59287844dca8cbfbc6cd0ff4b0fb3dd9c Mon Sep 17 00:00:00 2001 From: jprocter Date: Fri, 30 Oct 2009 10:23:34 +0000 Subject: [PATCH] na pdb: highlight any part of a residue, not just the CA atom --- src/jalview/appletgui/AppletJmol.java | 4 ++-- src/jalview/gui/AppJmol.java | 5 +++-- 2 files changed, 5 insertions(+), 4 deletions(-) diff --git a/src/jalview/appletgui/AppletJmol.java b/src/jalview/appletgui/AppletJmol.java index c7be8fb..aeec53d 100644 --- a/src/jalview/appletgui/AppletJmol.java +++ b/src/jalview/appletgui/AppletJmol.java @@ -550,10 +550,10 @@ public class AppletJmol extends EmbmenuFrame implements StructureListener, resetLastRes.append(":" + chain); } - eval.append(";wireframe 100;" + eval.toString() + ".CA;"); + eval.append(";wireframe 100;" + eval.toString() + ".*;"); resetLastRes.append(";wireframe 0;" + resetLastRes.toString() - + ".CA;spacefill 0;"); + + ".*;spacefill 0;"); eval.append("spacefill 200;select none"); diff --git a/src/jalview/gui/AppJmol.java b/src/jalview/gui/AppJmol.java index 3b94bf4..8e12b0d 100644 --- a/src/jalview/gui/AppJmol.java +++ b/src/jalview/gui/AppJmol.java @@ -596,6 +596,7 @@ public class AppJmol extends GStructureViewer implements StructureListener, public void highlightAtom(int atomIndex, int pdbResNum, String chain, String pdbfile) { + // TODO: rna: remove CA dependency in select string if (!pdbfile.equals(pdbentry.getFile())) return; @@ -616,10 +617,10 @@ public class AppJmol extends GStructureViewer implements StructureListener, resetLastRes.append(":" + chain); } - eval.append(";wireframe 100;" + eval.toString() + ".CA;"); + eval.append(";wireframe 100;" + eval.toString() + ".*;"); resetLastRes.append(";wireframe 0;" + resetLastRes.toString() - + ".CA;spacefill 0;"); + + ".*;spacefill 0;"); eval.append("spacefill 200;select none"); -- 1.7.10.2