From 5a655d5fbaaac8857f9c19a6ba375f76a5f894d5 Mon Sep 17 00:00:00 2001 From: "cmzmasek@gmail.com" Date: Thu, 20 Dec 2012 01:16:12 +0000 Subject: [PATCH] Edited wiki page RIO through web user interface. --- wiki/RIO.wiki | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/wiki/RIO.wiki b/wiki/RIO.wiki index a10b4eb..eb368e6 100644 --- a/wiki/RIO.wiki +++ b/wiki/RIO.wiki @@ -15,9 +15,9 @@ java -Xmx2048m -cp forester.jar org.forester.application.rio [options] ` : first gene tree to analyze (0-based index) * `-l=` : last gene tree to analyze (0-based index) - * -r= : re-rooting method for gene trees, possible values or 'none', 'midpoint', or 'outgroup' (default: by minizming duplications) - * -o= : for rooting by outgroup, name of outgroup (external gene tree node) - * -b : to use SDIR instead of GSDIR (faster, but non-binary species trees are disallowed) + * `-r=` : re-rooting method for gene trees, possible values or 'none', 'midpoint', or 'outgroup' (default: by minizming duplications) + * `-o=` : for rooting by outgroup, name of outgroup (external gene tree node) + * `-b` : to use SDIR instead of GSDIR (faster, but non-binary species trees are disallowed) ==== Gene trees ==== -- 1.7.10.2