From 5a94d9b984758398146faef8b78ff5954b5ddd91 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Fri, 6 May 2005 12:34:47 +0000
Subject: [PATCH] if clustal + edit, make new clustal

---
 src/jalview/appletgui/SeqPanel.java |    8 ++++++++
 src/jalview/gui/SeqPanel.java       |    7 +++++--
 2 files changed, 13 insertions(+), 2 deletions(-)

diff --git a/src/jalview/appletgui/SeqPanel.java b/src/jalview/appletgui/SeqPanel.java
index 46535b1..889533e 100755
--- a/src/jalview/appletgui/SeqPanel.java
+++ b/src/jalview/appletgui/SeqPanel.java
@@ -354,6 +354,14 @@ public class SeqPanel extends Panel
 
   void updateConservation(int i)
   {
+    if (av.getGlobalColourScheme() instanceof jalview.schemes.
+        ClustalxColourScheme)
+    {
+      av.setGlobalColourScheme(
+          new jalview.schemes.ClustalxColourScheme(av.alignment.getSequences(),
+                                                   av.alignment.getWidth()));
+    }
+
     av.updateConservation();
     av.updateConsensus();
   }
diff --git a/src/jalview/gui/SeqPanel.java b/src/jalview/gui/SeqPanel.java
index 3bc9bc5..fc93fbc 100755
--- a/src/jalview/gui/SeqPanel.java
+++ b/src/jalview/gui/SeqPanel.java
@@ -6,8 +6,6 @@ import jalview.datamodel.*;
 import javax.swing.*;
 import java.util.*;
 import jalview.schemes.*;
-import jalview.analysis.*;
-
 
 public class SeqPanel extends JPanel
 {
@@ -359,6 +357,11 @@ public class SeqPanel extends JPanel
 
   void updateConservation(int i)
   {
+    if(av.getGlobalColourScheme() instanceof jalview.schemes.ClustalxColourScheme)
+    {
+      av.setGlobalColourScheme(
+          new jalview.schemes.ClustalxColourScheme(av.alignment.getSequences(),av.alignment.getWidth() ));
+    }
     av.updateConservation();
     av.updateConsensus();
   }
-- 
1.7.10.2