From 5e419a000966d26e122d6a5ac0a29f93fa5e9600 Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Thu, 10 Sep 2015 02:39:15 +0100 Subject: [PATCH 1/1] JAL-1370 mark Jpred query sequence as reference sequence --- src/jalview/ws/jws1/JPredThread.java | 2 ++ 1 file changed, 2 insertions(+) diff --git a/src/jalview/ws/jws1/JPredThread.java b/src/jalview/ws/jws1/JPredThread.java index 62566cf..a8a49d0 100644 --- a/src/jalview/ws/jws1/JPredThread.java +++ b/src/jalview/ws/jws1/JPredThread.java @@ -586,6 +586,8 @@ class JPredThread extends JWS1Thread implements WSClientI if (newWindow) { AlignFrame af; + ((AlignmentI) res[0]).setSeqrep(((AlignmentI) res[0]) + .getSequenceAt(0)); if (input == null) { if (res[1] != null) -- 1.7.10.2