From 5ffe0c9e7660558cf3944593d7436bf908812b87 Mon Sep 17 00:00:00 2001 From: "cmzmasek@gmail.com" Date: Thu, 17 Jan 2013 00:14:48 +0000 Subject: [PATCH] inprogress --- forester/ruby/evoruby/exe/select_same_gn.rb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/forester/ruby/evoruby/exe/select_same_gn.rb b/forester/ruby/evoruby/exe/select_same_gn.rb index a7f70c1..7e234cc 100755 --- a/forester/ruby/evoruby/exe/select_same_gn.rb +++ b/forester/ruby/evoruby/exe/select_same_gn.rb @@ -31,7 +31,7 @@ module Evoruby longest_non_unique_genes_msa = Msa.new gn_re = /GN=(\S+)/ fragment_re = /fragment/i - species_re = /\[([A-Z]{3,5})\]$/ + species_re = /\[([A-Z]{3,6})\]$/ frag_counter = 0 no_gn_counter = 0 @@ -107,7 +107,7 @@ module Evoruby if IGNORE_SEQS_LACKING_GN puts "Sequences ignored because no \"GN=\" in desc : " + no_gn_counter.to_s end - puts "Sequences ignored because dentical sequence in same species : " + same_seq_counter.to_s + puts "Sequences ignored because identical sequence in same species: " + same_seq_counter.to_s puts puts -- 1.7.10.2