From 60068a9887dba34c9e7cf49b2f5f53a6fdc15931 Mon Sep 17 00:00:00 2001
From: Jim Procter <jprocter@issues.jalview.org>
Date: Fri, 7 Sep 2018 15:05:27 +0100
Subject: [PATCH] JAL-3107 update any group associated annotation rows when a
 new group is created

---
 help/html/releases.html         |    5 +++++
 src/jalview/gui/AlignFrame.java |    4 ++++
 2 files changed, 9 insertions(+)

diff --git a/help/html/releases.html b/help/html/releases.html
index 3dac399..4a7276b 100755
--- a/help/html/releases.html
+++ b/help/html/releases.html
@@ -120,6 +120,11 @@ li:before {
               annotation displayed.
             </li>
             <li>
+              <!-- JAL-3107 -->Group conservation/consensus not shown
+              for newly created group when 'Apply to all groups'
+              selected
+            </li>
+            <li>
               <!-- JAL-3087 -->Corrupted display when switching to
               wrapped mode when sequence panel's vertical scrollbar is
               visible.
diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index a27b495..c5a2bf0 100644
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -5304,6 +5304,10 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
   {
     if (avc.createGroup())
     {
+      if (applyAutoAnnotationSettings.isSelected())
+      {
+        alignPanel.updateAnnotation(true, false);
+      }
       alignPanel.alignmentChanged();
     }
   }
-- 
1.7.10.2