From 605b421631a3db7a2485552305be65f1ed71e951 Mon Sep 17 00:00:00 2001 From: "cmzmasek@gmail.com" Date: Wed, 15 May 2013 17:51:17 +0000 Subject: [PATCH] in progress --- forester/data/tol_147.xml | 5619 +++++++++++++++++++++++---------------------- 1 file changed, 2886 insertions(+), 2733 deletions(-) diff --git a/forester/data/tol_147.xml b/forester/data/tol_147.xml index 19129a2..b58baac 100644 --- a/forester/data/tol_147.xml +++ b/forester/data/tol_147.xml @@ -16,1309 +16,1296 @@ Unikonta - Opisthokonta & Apusozoa + + 33154 + Opisthokonta + Fungi/Metazoa group + - 33154 - Opisthokonta - Fungi/Metazoa group + Holozoa - - Holozoa - + Choanoflagellatea & Metazoa - Choanoflagellatea & Metazoa + + 33208 + Metazoa + kingdom + - - 33208 - Metazoa - kingdom - + Eumetazoa + + - Eumetazoa - - + Bilateria & Cnidaria - Bilateria & Cnidaria + Bilateria - Bilateria + Deuterostomia + + - Deuterostomia - - + + 7711 + Chordata + phylum + - - 7711 - Chordata - phylum - + Urochordata & Vertebrata - Urochordata & Vertebrata + + 7742 + Vertebrata + - 7742 - Vertebrata + 7776 + Gnathostomata + jawed vertebrates + superclass - 7776 - Gnathostomata - jawed vertebrates - superclass + 117571 + Euteleostomi - - 117571 - Euteleostomi - + Tetrapoda - Tetrapoda + Amniota - Amniota + + 40674 + Mammalia + class + - - 40674 - Mammalia - class - + Theria - Theria + + 9347 + Eutheria + Placental mammals + + + The new framework for understanding placental mammal evolution + - 9347 - Eutheria - Placental mammals + Boreoeutheria + Boreotheria - - The new framework for understanding placental mammal evolution - - Boreoeutheria - Boreotheria + 314146 + Euarchontoglires + superorder - 314146 - Euarchontoglires - superorder + Euarchonta - Euarchonta + 9443 + Primates + order - 9443 - Primates - order + 376913 + Haplorrhini + suborder - 376913 - Haplorrhini - suborder + 314293 + Simiiformes + infraorder - 314293 - Simiiformes - infraorder + 9526 + Catarrhini - 9526 - Catarrhini + 314295 + Hominoidea + Apes + superfamily - 314295 - Hominoidea - Apes - superfamily + 9604 + Hominidae + Great apes + family - 9604 - Hominidae - Great apes - family + 207598 + Homininae + subfamily - 207598 - Homininae - subfamily + Hominini + tribe - Hominini - tribe + 9606 + HUMAN + Homo sapiens + Human + species + http://www.thehindu.com/multimedia/dynamic/00029/IN05_DARWIN_29896f.jpg - - - 9606 - HUMAN - Homo sapiens - Human - species - http://www.thehindu.com/multimedia/dynamic/00029/IN05_DARWIN_29896f.jpg - - - - - 9598 - PANTR - Pan troglodytes - Chimpanzee - species - http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Schimpanse_zoo-leipig.jpg/800px-Schimpanse_zoo-leipig.jpg - - - 9595 - GORGO - Gorilla gorilla gorilla - Western lowland gorilla - subspecies - http://upload.wikimedia.org/wikipedia/commons/c/c7/Stavenn_Gorilla_gorilla_00.jpg + 9598 + PANTR + Pan troglodytes + Chimpanzee + species + http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Schimpanse_zoo-leipig.jpg/800px-Schimpanse_zoo-leipig.jpg - 9601 - PONAB - Pongo abelii - Sumatran orangutan - Pongo pygmaeus abelii - species - http://www.ism.ac.jp/~hasegawa/photos/animal3b.jpg + 9595 + GORGO + Gorilla gorilla gorilla + Western lowland gorilla + subspecies + http://upload.wikimedia.org/wikipedia/commons/c/c7/Stavenn_Gorilla_gorilla_00.jpg - 61853 - NOMLE - Nomascus leucogenys - Northern white-cheeked gibbon - Hylobates leucogenys - Hylobates concolor leucogenys + 9601 + PONAB + Pongo abelii + Sumatran orangutan + Pongo pygmaeus abelii species - http://uswest.ensembl.org/img/species/pic_Nomascus_leucogenys.png - http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Hylobates_concolor2.jpg/450px-Hylobates_concolor2.jpg + http://www.ism.ac.jp/~hasegawa/photos/animal3b.jpg - 9528 - Cercopithecinae - subfamily + 61853 + NOMLE + Nomascus leucogenys + Northern white-cheeked gibbon + Hylobates leucogenys + Hylobates concolor leucogenys + species + http://uswest.ensembl.org/img/species/pic_Nomascus_leucogenys.png + http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Hylobates_concolor2.jpg/450px-Hylobates_concolor2.jpg - - - 9544 - MACMU - Macaca mulatta - Rhesus macaque - species - http://www.our-pets.net/images/rhesus1.jpg - - - - - 9557 - PAPHA - Papio hamadryas - Hamadryas baboon - species - http://pin.primate.wisc.edu/fs/sheets/images/227lg.jpg - - - 9483 - CALJA - Callithrix jacchus - White-tufted-ear marmoset - Callithrix jacchus jacchus - species - http://www.arthurgrosset.com/mammals/photos/caljac28086.jpg + 9528 + Cercopithecinae + subfamily + + + 9544 + MACMU + Macaca mulatta + Rhesus macaque + species + http://www.our-pets.net/images/rhesus1.jpg + + + + + 9557 + PAPHA + Papio hamadryas + Hamadryas baboon + species + http://pin.primate.wisc.edu/fs/sheets/images/227lg.jpg + + - 9478 - TARSY - Tarsius syrichta - Philippine tarsier + 9483 + CALJA + Callithrix jacchus + White-tufted-ear marmoset + Callithrix jacchus jacchus species - http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0408/1425.jpeg + http://www.arthurgrosset.com/mammals/photos/caljac28086.jpg - 376911 - Strepsirrhini - suborder + 9478 + TARSY + Tarsius syrichta + Philippine tarsier + species + http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0408/1425.jpeg - - - 30608 - MICMU - Microcebus murinus - Lesser mouse lemur - species - http://daniel.montagnon.pagesperso-orange.fr/images/MicrocbusMurinus.jpg - - - - - 30611 - OTOGA - Otolemur garnettii - Garnett's greater bushbaby - Galago garnetti - Small-eared galago - Garnett's greater bushbaby - species - http://www.mbweni.com/images/Mbweni%20Images/naturetrail/small-earedgalago.jpg - - - 37347 - TUPBE - Tupaia belangeri - Common tree shrew - Tupaia glis belangeri - species - http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Tupaia_belangeri.JPG/800px-Tupaia_belangeri.JPG + 376911 + Strepsirrhini + suborder + + + 30608 + MICMU + Microcebus murinus + Lesser mouse lemur + species + http://daniel.montagnon.pagesperso-orange.fr/images/MicrocbusMurinus.jpg + + + + + 30611 + OTOGA + Otolemur garnettii + Garnett's greater bushbaby + Galago garnetti + Small-eared galago + Garnett's greater bushbaby + species + http://www.mbweni.com/images/Mbweni%20Images/naturetrail/small-earedgalago.jpg + + - 314147 - Glires - Rodents and rabbits + 37347 + TUPBE + Tupaia belangeri + Common tree shrew + Tupaia glis belangeri + species + http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Tupaia_belangeri.JPG/800px-Tupaia_belangeri.JPG + + + + + + 314147 + Glires + Rodents and rabbits + + + + 9989 + Rodentia + order - - 9989 - Rodentia - order - + Ctenohystrica & Mouse-related clade + + Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades. + - Ctenohystrica & Mouse-related clade - - Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades. - + + Mouse-related clade + - Mouse-related clade + 337687 + Muroidea - 337687 - Muroidea + 39107 + Murinae + subfamily - 39107 - Murinae - subfamily + 10090 + MOUSE + Mus musculus + Mouse + species + http://www.nsrl.ttu.edu/tmot1/images/mus_musc.jpg - - - 10090 - MOUSE - Mus musculus - Mouse - species - http://www.nsrl.ttu.edu/tmot1/images/mus_musc.jpg - - - - - 10116 - RAT - Rattus norvegicus - Rat - species - http://upload.wikimedia.org/wikipedia/commons/0/01/Rattus_norvegicus_1.jpg - - - 10036 - MESAU - Mesocricetus auratus - Golden hamster + 10116 + RAT + Rattus norvegicus + Rat species - http://www.dicts.info/img/ud/syrian_hamster.jpg + http://upload.wikimedia.org/wikipedia/commons/0/01/Rattus_norvegicus_1.jpg - 10020 - DIPOR - Dipodomys ordii - Ord's kangaroo rat + 10036 + MESAU + Mesocricetus auratus + Golden hamster species - http://www.nsrl.ttu.edu/tmot1/images/dipoordi.jpg + http://www.dicts.info/img/ud/syrian_hamster.jpg - 10141 - CAVPO - Cavia porcellus - Guinea pig + 10020 + DIPOR + Dipodomys ordii + Ord's kangaroo rat species - http://archive.vetknowledge.com/files/images/guinea-pig---tan.jpg + http://www.nsrl.ttu.edu/tmot1/images/dipoordi.jpg - 43179 - SPETR - Spermophilus tridecemlineatus - Thirteen-lined ground squirrel - Ictidomys tridecemlineatus + 10141 + CAVPO + Cavia porcellus + Guinea pig species - http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/ADW_mammals/Rodentia/Spermophilus4345.jpg/medium.jpg + http://archive.vetknowledge.com/files/images/guinea-pig---tan.jpg - 9975 - Lagomorpha - Rabbits, hares, pikas - order + 43179 + SPETR + Spermophilus tridecemlineatus + Thirteen-lined ground squirrel + Ictidomys tridecemlineatus + species + http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/ADW_mammals/Rodentia/Spermophilus4345.jpg/medium.jpg + + + + + + 9975 + Lagomorpha + Rabbits, hares, pikas + order + + + + 9978 + OCHPR + Ochotona princeps + Southern American pika + species + http://upload.wikimedia.org/wikipedia/commons/3/3b/Ochotona_princeps.jpg + + + + + 9986 + RABIT + Oryctolagus cuniculus + Rabbit + species + http://greennature.com/gallery/farm-animal-pictures/albino_rabbit.jpg - - - 9978 - OCHPR - Ochotona princeps - Southern American pika - species - http://upload.wikimedia.org/wikipedia/commons/3/3b/Ochotona_princeps.jpg - - - - - 9986 - RABIT - Oryctolagus cuniculus - Rabbit - species - http://greennature.com/gallery/farm-animal-pictures/albino_rabbit.jpg - - + + + + 314145 + Laurasiatheria + superorder + - 314145 - Laurasiatheria - superorder + Scrotifera - - Scrotifera - + Perissodactyla & Cetartiodactyla & Chiroptera - Perissodactyla & Cetartiodactyla & Chiroptera + Perissodactyla & Cetartiodactyla - Perissodactyla & Cetartiodactyla + + 91561 + Cetartiodactyla + Even-toed ungulates + - - 91561 - Cetartiodactyla - Even-toed ungulates - + Cetruminantia & Suina - Cetruminantia & Suina + + Cetruminantia + - Cetruminantia + 9895 + Bovidae + family - 9895 - Bovidae - family + 9913 + BOVIN + Bos taurus + Bovine + Bos bovis + species + http://www.biopix.eu/photos/jcs-bos-taurus-(dansk-rodbroget-kvaeg)-22141.jpg - - - 9913 - BOVIN - Bos taurus - Bovine - Bos bovis - species - http://www.biopix.eu/photos/jcs-bos-taurus-(dansk-rodbroget-kvaeg)-22141.jpg - - - - - 9940 - SHEEP - Ovis aries - Sheep - species - http://animaldiversity.ummz.umich.edu/site/resources/james_dowlinghealey/blacksheep.jpg/medium.jpg - - - 9721 - Cetacea - Whales - order + 9940 + SHEEP + Ovis aries + Sheep + species + http://animaldiversity.ummz.umich.edu/site/resources/james_dowlinghealey/blacksheep.jpg/medium.jpg - - - 9771 - BALMU - Balaenoptera musculus - Blue whale - species - http://2.bp.blogspot.com/_W90V87w3sr8/TT63uRT_U9I/AAAAAAAAAo8/to9O8zEeo7k/s1600/bluewhale.jpg - - - - - 9739 - TURTR - Tursiops truncatus - Atlantic bottle-nosed dolphin - Delphinus truncatus - species - http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Bottlenose_Dolphin_KSC04pd0178.jpg/800px-Bottlenose_Dolphin_KSC04pd0178.jpg - - - 9823 - PIG - Sus scrofa - Pig - species - http://www.batraciens-reptiles.com/sus%20scrofa2.jpg + 9721 + Cetacea + Whales + order + + + 9771 + BALMU + Balaenoptera musculus + Blue whale + species + http://2.bp.blogspot.com/_W90V87w3sr8/TT63uRT_U9I/AAAAAAAAAo8/to9O8zEeo7k/s1600/bluewhale.jpg + + + + + 9739 + TURTR + Tursiops truncatus + Atlantic bottle-nosed dolphin + Delphinus truncatus + species + http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Bottlenose_Dolphin_KSC04pd0178.jpg/800px-Bottlenose_Dolphin_KSC04pd0178.jpg + + - 30538 - LAMPA - Lama guanicoe pacos - Alpaca - Lama pacos + 9823 + PIG + Sus scrofa + Pig species - http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0658.jpeg + http://www.batraciens-reptiles.com/sus%20scrofa2.jpg - 9796 - HORSE - Equus caballus - Horse + 30538 + LAMPA + Lama guanicoe pacos + Alpaca + Lama pacos species - http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0801/0088.jpeg + http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0658.jpeg - 9397 - Chiroptera - Bats - order + 9796 + HORSE + Equus caballus + Horse + species + http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0801/0088.jpeg - - - 59463 - MYOLU - Myotis lucifugus - Little brown bat - species - http://biology.lakeheadu.ca/uploads/Nature_photography/brown_bat.jpg - - - - - 132908 - PTEVA - Pteropus vampyrus - Large flying fox - species - http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Pteropus_vampyrus1.jpg/412px-Pteropus_vampyrus1.jpg - - - Carnivora - 33554 - Carnivora + 9397 + Chiroptera + Bats order - 379584 - Caniformia - suborder + 59463 + MYOLU + Myotis lucifugus + Little brown bat + species + http://biology.lakeheadu.ca/uploads/Nature_photography/brown_bat.jpg - - - 9646 - AILME - Ailuropoda melanoleuca - Giant panda - species - http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Giant_Panda_2004-03-2.jpg/800px-Giant_Panda_2004-03-2.jpg - - - - CANFA - - 9615 - CANFA - Canis familiaris - Dog - Canis lupus familiaris - subspecies - http://upload.wikimedia.org/wikipedia/commons/a/ab/Wikilabrador_jardin.JPG - - - FELCA - 9685 - FELCA - Felis catus - Cat - Felis silvestris catus + 132908 + PTEVA + Pteropus vampyrus + Large flying fox species - http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Domestic_cat_cropped.jpg/755px-Domestic_cat_cropped.jpg + http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Pteropus_vampyrus1.jpg/412px-Pteropus_vampyrus1.jpg + Carnivora - 9362 - Insectivora - hedgehogs, shrews, moles and others + 33554 + Carnivora order - 9365 - ERIEU - Erinaceus europaeus - Western European hedgehog - species - http://upload.wikimedia.org/wikipedia/commons/d/d4/Igel01.jpg + 379584 + Caniformia + suborder + + + 9646 + AILME + Ailuropoda melanoleuca + Giant panda + species + http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Giant_Panda_2004-03-2.jpg/800px-Giant_Panda_2004-03-2.jpg + + + + CANFA + + 9615 + CANFA + Canis familiaris + Dog + Canis lupus familiaris + subspecies + http://upload.wikimedia.org/wikipedia/commons/a/ab/Wikilabrador_jardin.JPG + + + FELCA - 42254 - SORAR - Sorex araneus - Eurasian common shrew - European shrew + 9685 + FELCA + Felis catus + Cat + Felis silvestris catus species - http://www.batraciens-reptiles.com/musaraigne2.jpg + http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Domestic_cat_cropped.jpg/755px-Domestic_cat_cropped.jpg - - - - Atlantogenata - - 311790 - Afrotheria - superorder + 9362 + Insectivora + hedgehogs, shrews, moles and others + order - Paenungulata + 9365 + ERIEU + Erinaceus europaeus + Western European hedgehog + species + http://upload.wikimedia.org/wikipedia/commons/d/d4/Igel01.jpg - - - 9785 - LOXAF - Loxodonta africana - African savanna elephant - species - http://animaldiversity.ummz.umich.edu/site/resources/susan_hoffman/elephants.jpg - - - - - 9813 - PROCA - Procavia capensis - Cape hyrax - Rock dassie - species - http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0460.jpeg - - - 9371 - ECHTE - Echinops telfairi - Lesser hedgehog tenrec + 42254 + SORAR + Sorex araneus + Eurasian common shrew + European shrew species - http://animaldiversity.ummz.umich.edu/site/resources/david_kupitz/etelfairi.jpg + http://www.batraciens-reptiles.com/musaraigne2.jpg + + + + + Atlantogenata + + + + 311790 + Afrotheria + superorder + - 9348 - Xenarthra - Edentata - superorder + Paenungulata - 9358 - CHOHO - Choloepus hoffmanni - Hoffmann's two-fingered sloth + 9785 + LOXAF + Loxodonta africana + African savanna elephant species - http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Sloth8.jpg/800px-Sloth8.jpg + http://animaldiversity.ummz.umich.edu/site/resources/susan_hoffman/elephants.jpg - 9361 - DASNO - Dasypus novemcinctus - Nine-banded armadillo + 9813 + PROCA + Procavia capensis + Cape hyrax + Rock dassie species - http://anthropometaphors.files.wordpress.com/2008/11/nine-banded-armadillo41.jpg + http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0460.jpeg + + + 9371 + ECHTE + Echinops telfairi + Lesser hedgehog tenrec + species + http://animaldiversity.ummz.umich.edu/site/resources/david_kupitz/etelfairi.jpg + + - - - - 9263 - Metatheria - Marsupials - - - First combined cladistic analysis of marsupial mammal interrelationships - - - - Eometatheria + 9348 + Xenarthra + Edentata + superorder - 9315 - MACEU - Macropus eugenii - Tammar wallaby + 9358 + CHOHO + Choloepus hoffmanni + Hoffmann's two-fingered sloth species - http://upload.wikimedia.org/wikipedia/commons/d/de/Macropus_eugenii.jpg + http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Sloth8.jpg/800px-Sloth8.jpg - 9305 - SARHA - Sarcophilus harrisii - Tasmanian devil - Sarcophilus laniarius + 9361 + DASNO + Dasypus novemcinctus + Nine-banded armadillo species - http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg/727px-Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg + http://anthropometaphors.files.wordpress.com/2008/11/nine-banded-armadillo41.jpg - - MONDO - - 13616 - MONDO - Monodelphis domestica - Short-tailed gray opossum - species - http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/classic/monodelphis.jpg/medium.jpg - - - ORNAN - 9258 - ORNAN - Ornithorhynchus anatinus - Duckbill platypus - species - http://upload.wikimedia.org/wikipedia/commons/1/12/Platypus_BrokenRiver_QLD_Australia2.png + 9263 + Metatheria + Marsupials - - - - - 8457 - Sauropsida - - - Archosauria & Testudines - - The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan - - + + First combined cladistic analysis of marsupial mammal interrelationships - 8492 - Archosauria + Eometatheria - Neognathae - 8825 - Neognathae - superorder + 9315 + MACEU + Macropus eugenii + Tammar wallaby + species + http://upload.wikimedia.org/wikipedia/commons/d/de/Macropus_eugenii.jpg - - Phasianidae & Anatidae (waterfowl) - - - 9005 - Phasianidae - family - - - CHICK - - 9031 - CHICK - Gallus gallus - Chicken - Gallus domesticus - species - http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Rooster04_adjusted.jpg/800px-Rooster04_adjusted.jpg - - - - - 9103 - MELGA - Meleagris gallopavo - Common turkey - species - http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0205/0858.jpeg - - + + + + 9305 + SARHA + Sarcophilus harrisii + Tasmanian devil + Sarcophilus laniarius + species + http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg/727px-Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg + + + + + MONDO + + 13616 + MONDO + Monodelphis domestica + Short-tailed gray opossum + species + http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/classic/monodelphis.jpg/medium.jpg + + + + + + ORNAN + + 9258 + ORNAN + Ornithorhynchus anatinus + Duckbill platypus + species + http://upload.wikimedia.org/wikipedia/commons/1/12/Platypus_BrokenRiver_QLD_Australia2.png + + + + + + 8457 + Sauropsida + + + Archosauria & Testudines + + The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan + + + + + + + + 8492 + Archosauria + + + Neognathae + + 8825 + Neognathae + superorder + + + Phasianidae & Anatidae (waterfowl) + + + 9005 + Phasianidae + family + + + CHICK + + 9031 + CHICK + Gallus gallus + Chicken + Gallus domesticus + species + http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Rooster04_adjusted.jpg/800px-Rooster04_adjusted.jpg + - 8839 - ANAPL - Anas platyrhynchos - Domestic duck - Anas boschas + 9103 + MELGA + Meleagris gallopavo + Common turkey species - http://content.ornith.cornell.edu/UEWebApp/images/MPR_070302_100009_L.jpg + http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0205/0858.jpeg - 59729 - TAEGU - Taeniopygia guttata - Zebra finch - Poephila guttata + 8839 + ANAPL + Anas platyrhynchos + Domestic duck + Anas boschas species - http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg/355px-Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg + http://content.ornith.cornell.edu/UEWebApp/images/MPR_070302_100009_L.jpg - 8496 - ALLMI - Alligator mississippiensis - American alligator + 59729 + TAEGU + Taeniopygia guttata + Zebra finch + Poephila guttata species - http://upload.wikimedia.org/wikipedia/commons/c/cd/Two_american_alligators.jpg + http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg/355px-Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg - 13735 - PELSI - Pelodiscus sinensis - (Wiegmann, 1835) Cox et al. 1998 - Chinese softshell turtle - Trionyx sinensis + 8496 + ALLMI + Alligator mississippiensis + American alligator species - http://www.chelonia.org/PsinensisTR1.jpg + http://upload.wikimedia.org/wikipedia/commons/c/cd/Two_american_alligators.jpg - 28377 - ANOCA - Anolis carolinensis - Voigt, 1832 - Green anole - American chameleon + 13735 + PELSI + Pelodiscus sinensis + (Wiegmann, 1835) Cox et al. 1998 + Chinese softshell turtle + Trionyx sinensis species - http://content61.eol.org/content/2009/09/20/01/05528_580_360.jpg - http://content61.eol.org/content/2008/10/08/13/66818_580_360.jpg - http://upload.wikimedia.org/wikipedia/commons/thumb/5/5a/Anolis_carolinensis.jpg/800px-Anolis_carolinensis.jpg + http://www.chelonia.org/PsinensisTR1.jpg - - - - 8353 - Xenopus - genus - - - - 8364 - XENTR - Xenopus tropicalis - Western clawed frog - Silurana tropicalis - species - http://genoweb.univ-rennes1.fr/OGP/xenopus%20tropicalis.jpg - - - 8355 - XENLA - Xenopus laevis - Daudin, 1802 - African clawed frog - Bufo laevis + 28377 + ANOCA + Anolis carolinensis + Voigt, 1832 + Green anole + American chameleon species - http://upload.wikimedia.org/wikipedia/commons/e/e3/Xenopus_laevis.jpg + http://content61.eol.org/content/2009/09/20/01/05528_580_360.jpg + http://content61.eol.org/content/2008/10/08/13/66818_580_360.jpg + http://upload.wikimedia.org/wikipedia/commons/thumb/5/5a/Anolis_carolinensis.jpg/800px-Anolis_carolinensis.jpg - Teleostei - 32443 - Teleostei + 8353 + Xenopus + genus + + + + 8355 + XENLA + Xenopus laevis + Daudin, 1802 + African clawed frog + Bufo laevis + species + http://upload.wikimedia.org/wikipedia/commons/e/e3/Xenopus_laevis.jpg + + + + + 8364 + XENTR + Xenopus tropicalis + Western clawed frog + Silurana tropicalis + species + http://genoweb.univ-rennes1.fr/OGP/xenopus%20tropicalis.jpg + + + + + + Teleostei + + 32443 + Teleostei + + + + 123368 + Acanthomorpha - 123368 - Acanthomorpha + 32485 + Percomorpha - 32485 - Percomorpha + 129949 + Smegmamorpha - 129949 - Smegmamorpha + 32456 + Atherinomorpha + ORYLA - 32456 - Atherinomorpha + 8090 + ORYLA + Oryzias latipes + Medaka fish + Japanese ricefish + species + http://upload.wikimedia.org/wikipedia/commons/4/49/Nihonmedaka.jpg - - ORYLA - - 8090 - ORYLA - Oryzias latipes - Medaka fish - Japanese ricefish - species - http://upload.wikimedia.org/wikipedia/commons/4/49/Nihonmedaka.jpg - - - - - 8083 - XIPMA - Xiphophorus maculatus - Guenther, 1866 - Southern platyfish - Platypoecilus maculatus - species - http://upload.wikimedia.org/wikipedia/commons/6/6b/Poissons_06.jpg - - - GASAC - 69293 - GASAC - Gasterosteus aculeatus - Three-spined stickleback + 8083 + XIPMA + Xiphophorus maculatus + Guenther, 1866 + Southern platyfish + Platypoecilus maculatus species - http://www.fiskbasen.se/images/gasterosteus_aculeatus.jpg + http://upload.wikimedia.org/wikipedia/commons/6/6b/Poissons_06.jpg + GASAC - 31031 - Tetraodontidae - puffers - family + 69293 + GASAC + Gasterosteus aculeatus + Three-spined stickleback + species + http://www.fiskbasen.se/images/gasterosteus_aculeatus.jpg - - FUGRU - - 31033 - FUGRU - Takifugu rubripes - Japanese pufferfish - Fugu rubripes - species - http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Fugu_in_Tank.jpg/800px-Fugu_in_Tank.jpg - - - - TETNG - - 99883 - TETNG - Tetraodon nigroviridis - Green puffer - Chelonodon nigroviridis - species - http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Tetraodon_nigroviridis_1.jpg/800px-Tetraodon_nigroviridis_1.jpg - - + + + + 31031 + Tetraodontidae + puffers + family + - 8128 - ORENI - Tilapia nilotica - Linnaeus, 1758 - Nile tilapia - Tilapia nilotica + 31033 + TAKRU + Takifugu rubripes + Japanese pufferfish + Fugu rubripes + species + http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Fugu_in_Tank.jpg/800px-Fugu_in_Tank.jpg + + + + TETNG + + 99883 + TETNG + Tetraodon nigroviridis + Green puffer + Chelonodon nigroviridis species - http://www.jjphoto.dk/fish_archive/warm_freshwater/oreochromis_niloticus_niloticus.jpg + http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Tetraodon_nigroviridis_1.jpg/800px-Tetraodon_nigroviridis_1.jpg - 8049 - GADMO - Gadus morhua - Atlantic cod + 8128 + ORENI + Tilapia nilotica + Linnaeus, 1758 + Nile tilapia + Tilapia nilotica species - http://www.marinbi.com/g-morhua.jpg + http://www.jjphoto.dk/fish_archive/warm_freshwater/oreochromis_niloticus_niloticus.jpg - DANRE - 7955 - DANRE - Danio rerio - Zebrafish - Brachydanio rerio + 8049 + GADMO + Gadus morhua + Atlantic cod species - http://fishbase.org.cn/images/species/Darer_m0.jpg + http://www.marinbi.com/g-morhua.jpg - - - - 7868 - CALMI - Callorhynchus milii - Australian ghost shark - Australian ghost shark - species - http://www.tudiscovery.com/tiburones/que_es/popup_que/asset/07914907646434433_elephant_shark_380x290.jpg - + + DANRE + + 7955 + DANRE + Danio rerio + Zebrafish + Brachydanio rerio + species + http://fishbase.org.cn/images/species/Darer_m0.jpg + + - 7757 - PETMA - Petromyzon marinus - Sea lamprey + 7868 + CALMI + Callorhynchus milii + Australian ghost shark + Australian ghost shark species - http://www.uk-fish.info/pics/sealampray01.jpg + http://www.tudiscovery.com/tiburones/que_es/popup_que/asset/07914907646434433_elephant_shark_380x290.jpg - Urochordata - 7712 - Urochordata - subphylum + 7757 + PETMA + Petromyzon marinus + Sea lamprey + species + http://www.uk-fish.info/pics/sealampray01.jpg + + + + + Urochordata + + 7712 + Urochordata + subphylum + + + + 7718 + Ciona + genus + CIOIN - 7718 - Ciona - genus + 7719 + CIOIN + Ciona intestinalis + Transparent sea squirt + Ascidia intestinalis + species + http://adl.brs.gov.au/marinepests/images/Ciona_intestinalis2.jpg - - CIOIN - - 7719 - CIOIN - Ciona intestinalis - Transparent sea squirt - Ascidia intestinalis - species - http://adl.brs.gov.au/marinepests/images/Ciona_intestinalis2.jpg - - - - CIOSA - - 51511 - CIOSA - Ciona savignyi - Pacific transparent sea squirt - species - http://www.pnwscuba.com/invasives/photos/ciona4.jpg - - - OIKDI + CIOSA - 34765 - OIKDI - Oikopleura dioica - Tunicate + 51511 + CIOSA + Ciona savignyi + Pacific transparent sea squirt species - http://jellieszone.com/images/oikopleura.jpg + http://www.pnwscuba.com/invasives/photos/ciona4.jpg - - - BRAFL - - 7739 - BRAFL - Branchiostoma floridae - Florida lancelet - Amphioxus - species - http://www.nicerweb.com/sketches/video/PBS-ShapeOfLife/4.8_BonesBrawnBrains/Branchiostoma_floridae.jpg - + + OIKDI + + 34765 + OIKDI + Oikopleura dioica + Tunicate + species + http://jellieszone.com/images/oikopleura.jpg + + - Hemichordata & Echinodermata - - SACKO - - 10224 - SACKO - Saccoglossus kowalevskii - Agassiz, 1873 - Acorn worm - species - http://faculty.washington.edu/bjswalla/Hemichordata/Enteropneusta/SkowAK.jpg - - - - STRPU - - 7668 - STRPU - Strongylocentrotus purpuratus - Purple sea urchin - species - http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Strongylocentrotus_purpuratus_1.jpg/724px-Strongylocentrotus_purpuratus_1.jpg - - + BRAFL + + 7739 + BRAFL + Branchiostoma floridae + Florida lancelet + Amphioxus + species + http://www.nicerweb.com/sketches/video/PBS-ShapeOfLife/4.8_BonesBrawnBrains/Branchiostoma_floridae.jpg + + + + + Hemichordata & Echinodermata + + SACKO + + 10224 + SACKO + Saccoglossus kowalevskii + Agassiz, 1873 + Acorn worm + species + http://faculty.washington.edu/bjswalla/Hemichordata/Enteropneusta/SkowAK.jpg + + + + STRPU + + 7668 + STRPU + Strongylocentrotus purpuratus + Purple sea urchin + species + http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Strongylocentrotus_purpuratus_1.jpg/724px-Strongylocentrotus_purpuratus_1.jpg + + + + Protostomia - Protostomia + Ecdysozoa - Ecdysozoa + + 6656 + Arthropoda + phylum + - 6656 - Arthropoda - phylum + 197563 + Mandibulata - - 197563 - Mandibulata - + Pancrustacea - Pancrustacea + + 33340 + Neoptera + subclass + - 33340 - Neoptera - subclass + 33392 + Endopterygota + infraclass - - 33392 - Endopterygota - infraclass - + Hymenoptera & Lepidoptera & Diptera - Hymenoptera & Lepidoptera & Diptera + Lepidoptera & Diptera - Lepidoptera & Diptera + + 7147 + Diptera + order + - 7147 - Diptera - order + 7215 + Drosophila + fruit flies + genus + + The 19 Genomes of Drosophila: A BAC Library Resource for Genus-Wide and Genome-Scale Comparative Evolutionary Research + - 7215 - Drosophila - fruit flies - genus + 32341 + Sophophora + subgenus - - The 19 Genomes of Drosophila: A BAC Library Resource for Genus-Wide and Genome-Scale Comparative Evolutionary Research - - - 32341 - Sophophora - subgenus - + melanogaster & pseudoobscura subgroups - melanogaster & pseudoobscura subgroups + + 32346 + melanogaster group + - 32346 - melanogaster group + 32351 + melanogaster subgroup - - 32351 - melanogaster subgroup - + DROSE & DROSI & DROME & DROYA - DROSE & DROSI & DROME & DROYA + DROSE & DROSI & DROME - DROSE & DROSI & DROME + DROSE & DROSI - DROSE & DROSI - - - 7238 - DROSE - Drosophila sechellia - Fruit fly - species - - - - - 7240 - DROSI - Drosophila simulans - Fruit fly - species - - + + 7238 + DROSE + Drosophila sechellia + Fruit fly + species + - 7227 - DROME - Drosophila melanogaster + 7240 + DROSI + Drosophila simulans Fruit fly species - http://www.snv.jussieu.fr/bmedia/ATP/images/dro-mal1.jpg - 7245 - DROYA - Drosophila yakuba + 7227 + DROME + Drosophila melanogaster Fruit fly species + http://www.snv.jussieu.fr/bmedia/ATP/images/dro-mal1.jpg - 7220 - DROER - Drosophila erecta + 7245 + DROYA + Drosophila yakuba Fruit fly species @@ -1326,9 +1313,9 @@ - 7217 - DROAN - Drosophila ananassae + 7220 + DROER + Drosophila erecta Fruit fly species @@ -1336,981 +1323,957 @@ - 32358 - pseudoobscura subgroup + 7217 + DROAN + Drosophila ananassae + Fruit fly + species - - - 7234 - DROPE - Drosophila persimilis - Fruit fly - species - - - - - 46245 - DROPS - Drosophila pseudoobscura pseudoobscura - Fruit fly - subspecies - http://www.naylorgallery.com/wp-content/uploads/fly4stack01small.jpg - - - 7260 - DROWI - Drosophila willistoni - Fruit fly - species - - - - - Drosophila subgenus & Hawaiian Drosophila - - - Drosophila - subgenus + 32358 + pseudoobscura subgroup - 7230 - DROMO - Drosophila mojavensis + 7234 + DROPE + Drosophila persimilis Fruit fly species - 7244 - DROVI - Drosophila virilis + 46245 + DROPS + Drosophila pseudoobscura pseudoobscura Fruit fly - species + subspecies + http://www.naylorgallery.com/wp-content/uploads/fly4stack01small.jpg - - - 7222 - DROGR - Drosophila grimshawi - Fruit fly - Idiomyia grimshawi - species - http://www.pacificislandbooks.com/fruitf~1.jpg - - - - - - 7157 - Culicidae - mosquitos - family - - AEDAE - 7159 - AEDAE - Aedes aegypti - Yellowfever mosquito - Culex aegypti + 7260 + DROWI + Drosophila willistoni + Fruit fly species - http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Aedes_aegypti_biting_human.jpg/757px-Aedes_aegypti_biting_human.jpg + + + Drosophila subgenus & Hawaiian Drosophila - ANOGA - 7165 - ANOGA - Anopheles gambiae - African malaria mosquito - species - http://upload.wikimedia.org/wikipedia/commons/e/e9/Anopheles_gambiae_Mosquito.jpg + Drosophila + subgenus + + + 7230 + DROMO + Drosophila mojavensis + Fruit fly + species + + + + + 7244 + DROVI + Drosophila virilis + Fruit fly + species + + - CULPI - 7175 - CULPI - Culex pipiens - House mosquito + 7222 + DROGR + Drosophila grimshawi + Fruit fly + Idiomyia grimshawi species - http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Culex_pipiens_2007-1.jpg/628px-Culex_pipiens_2007-1.jpg + http://www.pacificislandbooks.com/fruitf~1.jpg - BOMMO - - 7091 - BOMMO - Bombyx mori - Silk moth - species - http://lepidoptera.butterflyhouse.com.au/bomb/mori5.jpg - - - - - - 7400 - Apocrita - wasps, ants and bees - - - 7434 - Aculeata - suborder + 7157 + Culicidae + mosquitos + family - APIME + AEDAE - 7460 - APIME - Apis mellifera - Honeybee + 7159 + AEDAE + Aedes aegypti + Yellowfever mosquito + Culex aegypti species - http://www.floridanature.org/photos/Apis_mellifera_6b_&_Trifolium_sp.,_TBP,_Tallahassee,_20030323.jpg + http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Aedes_aegypti_biting_human.jpg/757px-Aedes_aegypti_biting_human.jpg + ANOGA - 12957 - ATTCE - Atta cephalotes - Linnaeus, 1758 - Leafcutter ant + 7165 + ANOGA + Anopheles gambiae + African malaria mosquito species - http://upload.wikimedia.org/wikipedia/commons/4/4e/Leaf-cutting_ant.jpg + http://upload.wikimedia.org/wikipedia/commons/e/e9/Anopheles_gambiae_Mosquito.jpg + + + + CULPI + + 7175 + CULPI + Culex pipiens + House mosquito + species + http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Culex_pipiens_2007-1.jpg/628px-Culex_pipiens_2007-1.jpg - - - NASVI - - 7425 - NASVI - Nasonia vitripennis - Parasitic wasp - species - http://www.freshpond.org/nasonia.jpg - + + BOMMO + + 7091 + BOMMO + Bombyx mori + Silk moth + species + http://lepidoptera.butterflyhouse.com.au/bomb/mori5.jpg + + - TRICA - - 7070 - TRICA - Tribolium castaneum - Red flour beetle - species - http://www.ars.usda.gov/sp2UserFiles/Place/54300530/proj/tribolium/rfb.jpg - - - - - - 33342 - Paraneoptera - infraclass - - - 7524 - Hemiptera - order + 7400 + Apocrita + wasps, ants and bees - ACYPI - 7029 - ACYPI - Acyrthosiphon pisum - Pea aphid - species - http://www.agroatlas.ru/content/pests/Acyrthosiphon_pisum/Acyrthosiphon_pisum.jpg + 7434 + Aculeata + suborder + + APIME + + 7460 + APIME + Apis mellifera + Honeybee + species + http://www.floridanature.org/photos/Apis_mellifera_6b_&_Trifolium_sp.,_TBP,_Tallahassee,_20030323.jpg + + + + + 12957 + ATTCE + Atta cephalotes + Linnaeus, 1758 + Leafcutter ant + species + http://upload.wikimedia.org/wikipedia/commons/4/4e/Leaf-cutting_ant.jpg + + - RHOPR + NASVI - 13249 - RHOPR - Rhodnius prolixus - Triatomid bug + 7425 + NASVI + Nasonia vitripennis + Parasitic wasp species - http://upload.wikimedia.org/wikipedia/commons/b/b9/Rhodnius_prolixus.jpg + http://www.freshpond.org/nasonia.jpg - - - 121224 - PEDHC - Pediculus humanus subsp. corporis - Body louse - subspecies - http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Body_lice.jpg/436px-Body_lice.jpg - - - - - - - 6658 - Branchiopoda - class - - - - 6661 - ARTSF - Artemia franciscana - Brine shrimp - Artemia sanfranciscana - species - http://www.alireza-asem.ir/images/Artemia.jpg - - DAPPU + TRICA - 6669 - DAPPU - Daphnia pulex - Water flea + 7070 + TRICA + Tribolium castaneum + Red flour beetle species - http://www.microscopy-uk.org.uk/mag/imgjun99/daphni.jpg + http://www.ars.usda.gov/sp2UserFiles/Place/54300530/proj/tribolium/rfb.jpg - - - - 61985 - Myriapoda - subphylum - - 7553 - Diplopoda - millipedes - class + 33342 + Paraneoptera + infraclass - 118561 - Helminthomorpha - subclass + 7524 + Hemiptera + order + ACYPI - 364406 - Antrokoreana gracilipes + 7029 + ACYPI + Acyrthosiphon pisum + Pea aphid species - http://www.gwbaekdu.com/data/2d/%EA%B3%A1%EC%84%9D%EA%B5%B4_4(%EB%93%B1%EC%A4%84%EA%B5%B4%EB%85%B8%EB%9E%98%EA%B8%B0).jpg + http://www.agroatlas.ru/content/pests/Acyrthosiphon_pisum/Acyrthosiphon_pisum.jpg + RHOPR - 174156 - NARAN - Narceus annularis - Millipede + 13249 + RHOPR + Rhodnius prolixus + Triatomid bug species - http://i.pbase.com/g4/59/68959/2/59864073.narceus0705062large.jpg + http://upload.wikimedia.org/wikipedia/commons/b/b9/Rhodnius_prolixus.jpg - 52428 - Polyxenus lagurus - bristly millipede - species - http://upload.wikimedia.org/wikipedia/commons/5/54/Polyxenus.lagurus.1.jpg + 121224 + PEDHC + Pediculus humanus subsp. corporis + Body louse + subspecies + http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Body_lice.jpg/436px-Body_lice.jpg + + + + 6658 + Branchiopoda + class + - 7540 - Chilopoda - centipedes - class + 6661 + ARTSF + Artemia franciscana + Brine shrimp + Artemia sanfranciscana + species + http://www.alireza-asem.ir/images/Artemia.jpg + + + + DAPPU + + 6669 + DAPPU + Daphnia pulex + Water flea + species + http://www.microscopy-uk.org.uk/mag/imgjun99/daphni.jpg + + + + + + + 61985 + Myriapoda + subphylum + + + + 7553 + Diplopoda + millipedes + class + + + + 118561 + Helminthomorpha + subclass - 29022 - SCUCO - Scutigera coleoptrata - House centipede + 364406 + Antrokoreana gracilipes species - http://upload.wikimedia.org/wikipedia/commons/1/14/Scutigera_coleoptrata.JPG + http://www.gwbaekdu.com/data/2d/%EA%B3%A1%EC%84%9D%EA%B5%B4_4(%EB%93%B1%EC%A4%84%EA%B5%B4%EB%85%B8%EB%9E%98%EA%B8%B0).jpg - 126957 - Strigamia maritima + 174156 + NARAN + Narceus annularis + Millipede species - http://images.marinespecies.org/resized/22703_strigamia-maritima-male-loch-linnhe-scotland.jpg + http://i.pbase.com/g4/59/68959/2/59864073.narceus0705062large.jpg + + + 52428 + Polyxenus lagurus + bristly millipede + species + http://upload.wikimedia.org/wikipedia/commons/5/54/Polyxenus.lagurus.1.jpg + + + + + + 7540 + Chilopoda + centipedes + class + + + + 29022 + SCUCO + Scutigera coleoptrata + House centipede + species + http://upload.wikimedia.org/wikipedia/commons/1/14/Scutigera_coleoptrata.JPG + + + + + 126957 + Strigamia maritima + species + http://images.marinespecies.org/resized/22703_strigamia-maritima-male-loch-linnhe-scotland.jpg + + - - - IXOSC - - 6945 - IXOSC - Ixodes scapularis - Black-legged tick - Deer tick - species - http://upload.wikimedia.org/wikipedia/commons/8/8c/Deertick.jpg - + IXOSC - 119089 - Chromadorea - class + 6945 + IXOSC + Ixodes scapularis + Black-legged tick + Deer tick + species + http://upload.wikimedia.org/wikipedia/commons/8/8c/Deertick.jpg - - + + + + + 119089 + Chromadorea + class + + + + + nematode Clade V - nematode Clade V + + 6237 + Caenorhabditis + genus + + + Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss + - - 6237 - Caenorhabditis - genus - - - Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss - + CAEBR & CAERE & CAEBE & CAEEL - CAEBR & CAERE & CAEBE & CAEEL + CAEBR & CAERE & CAEBE - CAEBR & CAERE & CAEBE + CAEBR & CAERE - CAEBR & CAERE - - - 6238 - CAEBR - Caenorhabditis briggsae - species - http://www.life.umd.edu/biology/haag/briggsae_herm.jpg - - - - - 31234 - CAERE - Caenorhabditis remanei - Caenorhabditis vulgaris - species - http://lemur.amu.edu.pl/share/php/mirnest/species_images/Caenorhabditis_remanei.jpg - - + + 6238 + CAEBR + Caenorhabditis briggsae + species + http://www.life.umd.edu/biology/haag/briggsae_herm.jpg + - 135651 - CAEBE - Caenorhabditis brenneri - Nematode worm - Caenorhabditis CB5161 + 31234 + CAERE + Caenorhabditis remanei + Caenorhabditis vulgaris species + http://lemur.amu.edu.pl/share/php/mirnest/species_images/Caenorhabditis_remanei.jpg - 6239 - CAEEL - Caenorhabditis elegans + 135651 + CAEBE + Caenorhabditis brenneri + Nematode worm + Caenorhabditis CB5161 species - http://homepages.ed.ac.uk/mbx/C_elegans/N2_picture.gif - 281687 - CAEJA - Caenorhabditis japonica + 6239 + CAEEL + Caenorhabditis elegans species + http://homepages.ed.ac.uk/mbx/C_elegans/N2_picture.gif - PRIPA - 54126 - PRIPA - Pristionchus pacificus + 281687 + CAEJA + Caenorhabditis japonica species - http://smithlabdb.usc.edu/images/Pristionchus_pacificus.jpg - BRUMA + PRIPA - 6279 - BRUMA - Brugia malayi - Filarial nematode worm + 54126 + PRIPA + Pristionchus pacificus species - http://upload.wikimedia.org/wikipedia/commons/4/4a/Brugia_malayi.JPG + http://smithlabdb.usc.edu/images/Pristionchus_pacificus.jpg + + BRUMA + + 6279 + BRUMA + Brugia malayi + Filarial nematode worm + species + http://upload.wikimedia.org/wikipedia/commons/4/4a/Brugia_malayi.JPG + + + + + Lophotrochozoa - Lophotrochozoa + Annelida & Mollusca - Annelida & Mollusca + + 6447 + Mollusca + phylum + - 6340 - Annelida - phylum + 6448 + Gastropoda + class - 283909 - CTEXX - Capitella teleta - Blake, Grassle & Eckelbarger, 2009 - Capitella sp. I + 6500 + APLCA + Aplysia californica + California sea hare species - http://genome.jgi-psf.org/Capca1/capitella.jpg + http://upload.wikimedia.org/wikipedia/commons/e/ef/Aplysia_californica.jpg - 6412 - HELRO - Helobdella robusta - Californian leech + 225164 + LOTGI + Lottia gigantea + Owl limpet species - http://genome.jgi-psf.org/Helro1/Helro_leech.jpg + http://nathistoc.bio.uci.edu/Molluscs/OwlLimpet1.jpg - 6447 - Mollusca - phylum + 6545 + Pteriomorphia + Pteriomorpha + subclass - 6448 - Gastropoda - class + 29159 + CRAGI + Crassostrea gigas + Thunberg, 1793 + Pacific oyster + Crassotrea gigas + Crassostrea angulata + Ostrea gigas + species + http://www.marlin.ac.uk/imgs/o_cragig.jpg - - - 225164 - LOTGI - Lottia gigantea - Owl limpet - species - http://nathistoc.bio.uci.edu/Molluscs/OwlLimpet1.jpg - - - - - 6500 - APLCA - Aplysia californica - California sea hare - species - http://upload.wikimedia.org/wikipedia/commons/e/ef/Aplysia_californica.jpg - - - 6545 - Pteriomorphia - Pteriomorpha - subclass + 50426 + PINFU + Pinctada fucata + Pearl oyster + species + http://upload.wikimedia.org/wikipedia/commons/1/1e/Pinctada_margaritifera_MHNT.CON.2002.893.jpg - - - 29159 - CRAGI - Crassostrea gigas - Thunberg, 1793 - Pacific oyster - Crassotrea gigas - Crassostrea angulata - Ostrea gigas - species - http://www.marlin.ac.uk/imgs/o_cragig.jpg - - - - - 50426 - PINFU - Pinctada fucata - Pearl oyster - species - http://upload.wikimedia.org/wikipedia/commons/1/1e/Pinctada_margaritifera_MHNT.CON.2002.893.jpg - - - 6157 - Platyhelminthes + 6340 + Annelida phylum - 6183 - SCHMA - Schistosoma mansoni - Blood fluke + 283909 + CTEXX + Capitella teleta + Blake, Grassle & Eckelbarger, 2009 + Capitella sp. I species - http://animaldiversity.ummz.umich.edu/site/resources/Grzimek_inverts/Trematoda/Schistosoma_mansoni.jpg/medium.jpg + http://genome.jgi-psf.org/Capca1/capitella.jpg - SCHMD - 79327 - SCHMD - Schmidtea mediterranea - Freshwater planarian flatworm + 6412 + HELRO + Helobdella robusta + Californian leech species - http://www.astrobio.net/images/galleryimages_images/Gallery_Image_8136.jpg + http://genome.jgi-psf.org/Helro1/Helro_leech.jpg + + + 6157 + Platyhelminthes + phylum + + + + 6183 + SCHMA + Schistosoma mansoni + Blood fluke + species + http://animaldiversity.ummz.umich.edu/site/resources/Grzimek_inverts/Trematoda/Schistosoma_mansoni.jpg/medium.jpg + + + + SCHMD + + 79327 + SCHMD + Schmidtea mediterranea + Freshwater planarian flatworm + species + http://www.astrobio.net/images/galleryimages_images/Gallery_Image_8136.jpg + + + + + + Cnidaria + + 6073 + Cnidaria + phylum + - Cnidaria - 6073 - Cnidaria - phylum + 6102 + Hexacorallia + Ceriantipatharia + Zoantharia + subclass - 6102 - Hexacorallia - Ceriantipatharia - Zoantharia - subclass + 70779 + ACRDI + Acropora digitifera + Staghorn coral + species + http://www.botany.hawaii.edu/basch/uhnpscesu/htms/NPSAcorl/images/acropori/acrdigitif7.jpg - - - 45351 - NEMVE - Nematostella vectensis - Starlet sea anemone - species - http://genome.jgi-psf.org/Nemve1/Nematostellapolyp.jpg - - - - - 70779 - ACRDI - Acropora digitifera - Staghorn coral - species - http://www.botany.hawaii.edu/basch/uhnpscesu/htms/NPSAcorl/images/acropori/acrdigitif7.jpg - - - 6085 - HMAXX - Hydra magnipapillata - Ito, 1947 + 45351 + NEMVE + Nematostella vectensis + Starlet sea anemone species - http://www.ncbi.nlm.nih.gov/UniGene/IMG/6085.gif + http://genome.jgi-psf.org/Nemve1/Nematostellapolyp.jpg - - - TRIAD - - 10228 - TRIAD - Trichoplax adhaerens - Trichoplax reptans - species - http://ncse.com/files/images/trichoplax_ana_signorovitch.jpg - - - + + + 6085 + HMAXX + Hydra magnipapillata + Ito, 1947 + species + http://www.ncbi.nlm.nih.gov/UniGene/IMG/6085.gif + + + TRIAD - 400682 - AMPQE - Amphimedon queenslandica - Hooper & Van Soest, 2006 - Sponge - Reniera sp. JGI-2005 + 10228 + TRIAD + Trichoplax adhaerens + Trichoplax reptans species - http://images.marinespecies.org/resized/46694_amphimedon-queenslandica.jpg + http://ncse.com/files/images/trichoplax_ana_signorovitch.jpg + + - 81524 - Codonosigidae - family + 400682 + AMPQE + Amphimedon queenslandica + Hooper & Van Soest, 2006 + Sponge + Reniera sp. JGI-2005 + species + http://images.marinespecies.org/resized/46694_amphimedon-queenslandica.jpg - - MONBE - - 81824 - MONBE - Monosiga brevicollis - Choanoflagellate - species - http://genome.jgi-psf.org/Monbr1/Monosiga_1.jpg - - - - - 946362 - SALS5 - Salpingoeca rosetta - Proterospongia sp. ATCC 50818 - Salpingoeca sp. ATCC 50818 - species - http://cfb.unh.edu/phycokey/Choices/Amoebae_Flagellates_Ciliates/Choanoflagellates/SALPINGOECA/salpingoeca_02_300x240_Kalle%20Olli_botany.ut.ee.jpg - - - - - Ichthyophonida & Filasterea - 198625 - Ichthyophonida - order + 400682 + AMPQE + Amphimedon queenslandica + Hooper & Van Soest, 2006 + Sponge + Reniera sp. JGI-2005 + species + http://images.marinespecies.org/resized/46694_amphimedon-queenslandica.jpg - - - 4881 - AMOPA - Amoebidium parasiticum - species - http://www.nhm.ku.edu/~fungi/Ilustgenera/amoebi.jpg - - - - SPHARC - - 72019 - Sphaeroforma arctica - species - http://www.sciencedirect.com/cache/MiamiImageURL/1-s2.0-S0168952507000236-gr2.jpg - - + + + + 81524 + Codonosigidae + family + + MONBE - Filasterea + 81824 + MONBE + Monosiga brevicollis + Choanoflagellate + species + http://genome.jgi-psf.org/Monbr1/Monosiga_1.jpg + + + + + 946362 + SALS5 + Salpingoeca rosetta + Proterospongia sp. ATCC 50818 + Salpingoeca sp. ATCC 50818 + species + http://cfb.unh.edu/phycokey/Choices/Amoebae_Flagellates_Ciliates/Choanoflagellates/SALPINGOECA/salpingoeca_02_300x240_Kalle%20Olli_botany.ut.ee.jpg - - - - - - CAPOWC - - 192875 - Capsaspora owczarzaki - species - http://www.berfrois.com/wp-content/uploads/2011/03/Capsaspora_owczarzaki.jpg - - - - MINVIB - - 134558 - Ministeria vibrans - species - http://ars.els-cdn.com/content/image/1-s2.0-S0959437X03001382-gr2.jpg - - - - Holomycota - Nucletmycea - + Ichthyophonida & Filasterea - 4751 - Fungi - kingdom + 198625 + Ichthyophonida + order - Dikarya & Mucoromycotina & Kickxellomycotina & Blastocladiomycota & Chytridiomycota & Neocallimastigomycota + + 4881 + AMOPA + Amoebidium parasiticum + species + http://www.nhm.ku.edu/~fungi/Ilustgenera/amoebi.jpg + + + + + 72019 + SARXX + Sphaeroforma arctica + species + http://www.sciencedirect.com/cache/MiamiImageURL/1-s2.0-S0168952507000236-gr2.jpg + + + + + + Filasterea + + + + + + + + 595528 + CAPO3 + Capsaspora owczarzaki (strain ATCC 30864) + http://www.berfrois.com/wp-content/uploads/2011/03/Capsaspora_owczarzaki.jpg + + + + + 134558 + Ministeria vibrans + species + http://ars.els-cdn.com/content/image/1-s2.0-S0959437X03001382-gr2.jpg + + + + + + + + Holomycota + Nucletmycea + + + + 4751 + Fungi + kingdom + + + Dikarya & Mucoromycotina & Kickxellomycotina & Blastocladiomycota & Chytridiomycota & Neocallimastigomycota + + Dikarya & Mucoromycotina & Kickxellomycotina & Blastocladiomycota & Chytridiomycota - Dikarya & Mucoromycotina & Kickxellomycotina & Blastocladiomycota & Chytridiomycota + Dikarya & Mucoromycotina & Kickxellomycotina & Blastocladiomycota - Dikarya & Mucoromycotina & Kickxellomycotina & Blastocladiomycota + Dikarya & Mucoromycotina & Kickxellomycotina - Dikarya & Mucoromycotina & Kickxellomycotina + Dikarya & Mucoromycotina - Dikarya & Mucoromycotina + + 451864 + Dikarya + subkingdom + + + + + - 451864 - Dikarya - subkingdom + 4890 + Ascomycota + phylum - - - - - - 4890 - Ascomycota - phylum - + Pezizomycotina & Saccharomycetales - Pezizomycotina & Saccharomycetales + + 147538 + Pezizomycotina + Euascomycota + subphylum + + + A five-gene phylogeny of Pezizomycotina + + + - 147538 - Pezizomycotina - Euascomycota - subphylum + 716546 + Leotiomyceta - - A five-gene phylogeny of Pezizomycotina - - - - - 716546 - Leotiomyceta - + Sordariomyceta & Dothideomycetes & Trichocomaceae & Lecanoromycetes - Sordariomyceta & Dothideomycetes & Trichocomaceae & Lecanoromycetes + Sordariomyceta & Dothideomycetes & Lecanoromycetes - Sordariomyceta & Dothideomycetes & Lecanoromycetes + Sordariomyceta & Lecanoromycetes - Sordariomyceta & Lecanoromycetes + + 715989 + Sordariomyceta + - 715989 - Sordariomyceta + 147550 + Sordariomycetes + class - - 147550 - Sordariomycetes - class - + Magnaporthales & Hypocreales - Magnaporthales & Hypocreales - - - 5125 - Hypocreales - order - - - ACRALC - - 398408 - Acremonium alcalophilum - species - http://genome.jgi-psf.org/public/Acral1_c3a/Acral1.jpg - - - - GIBZE - - 5518 - GIBZE - Gibberella zeae - Wheat head blight fungus - Fusarium graminearum - species - http://www.apsnet.org/publications/apsnetfeatures/PublishingImages/1999%20Features/Fusarium02sm.jpg - - - - - 29875 - HYPVI - Hypocrea virens - Gliocladium virens - Trichoderma virens - Gliocladium flavofuscum - species - http://www.ars.usda.gov/images/docs/10920_11114/Stroma1.jpg - - - + + 5125 + Hypocreales + order + - MAGGR - 148305 - MAGGR - Magnaporthe grisea - Rice blast fungus - Pyricularia grisea + 398408 + AALXX + Acremonium alcalophilum species - http://www.forestryimages.org/images/768x512/5369002.jpg + http://genome.jgi-psf.org/public/Acral1_c3a/Acral1.jpg - - - - 5139 - Sordariales - order - + GIBZE - 35718 - Chaetomiaceae - family + 5518 + GIBZE + Gibberella zeae + Wheat head blight fungus + Fusarium graminearum + species + http://www.apsnet.org/publications/apsnetfeatures/PublishingImages/1999%20Features/Fusarium02sm.jpg - - - 35719 - Thielavia - genus - - - MYCTHE - - 573728 - Myceliophthora thermophila - (Apinis) Oorschot 1977 - Sporotrichum thermophilum - anamorph of Thielavia heterothallica - species - http://genome.jgi-psf.org/public/Spoth2/Spoth0.jpg - - - - THITER - - 193532 - Thielavia terrestris - Malloch & Cain 1972 - Acremonium alabamense - species - http://genome.jgi-psf.org/public/Thite2/Thite1.jpg - - - - - CHAGB - - 1029505 - CHAGB - Chaetomium globosum - Kunze 1817 - Soil fungus - species - - - NEUCR - 5141 - NEUCR - Neurospora crassa + 29875 + HYPVI + Hypocrea virens + Gliocladium virens + Trichoderma virens + Gliocladium flavofuscum species + http://www.ars.usda.gov/images/docs/10920_11114/Stroma1.jpg + + MAGGR + + 148305 + MAGGR + Magnaporthe grisea + Rice blast fungus + Pyricularia grisea + species + http://www.forestryimages.org/images/768x512/5369002.jpg + + - 147548 - Leotiomycetes - class + 5139 + Sordariales + order - 28983 - Sclerotiniaceae + 35718 + Chaetomiaceae family - 40559 - BOTFU - Botryotinia fuckeliana - Noble rot fungus - Botrytis cinerea - species + 35719 + Thielavia + genus + + + 573729 + THIHA + Thielavia heterothallica (strain ATCC 42464 / BCRC 31852 / DSM 1799) + (Apinis) Oorschot 1977 + Sporotrichum thermophilum + Myceliophthora thermophila + species + http://genome.jgi-psf.org/public/Spoth2/Spoth0.jpg + + + + + 578455 + THITE + Thielavia terrestris (strain ATCC 38088 / NRRL 8126) + Acremonium alabamense + Thielavia terrestris NRRL 8126 + http://genome.jgi-psf.org/public/Thite2/Thite1.jpg + + + CHAGB - 5180 - SCLSC - Sclerotinia sclerotiorum - White mold - Whetzelinia sclerotiorum + 1029505 + CHAGB + Chaetomium globosum + Kunze 1817 + Soil fungus species - OIDMAI + NEUCR - 78148 - Oidiodendron maius + 5141 + NEUCR + Neurospora crassa species @@ -2318,847 +2281,860 @@ - 388435 - Lecanoromycetidae - subclass + 147548 + Leotiomycetes + class - CLAGRA - 27339 - Cladonia grayi - Cladonia grayi Merr - species - http://upload.wikimedia.org/wikipedia/commons/b/b6/Cladonia_grayi-11.jpg + 28983 + Sclerotiniaceae + family + + + 40559 + BOTFU + Botryotinia fuckeliana + Noble rot fungus + Botrytis cinerea + species + + + + + 5180 + SCLSC + Sclerotinia sclerotiorum + White mold + Whetzelinia sclerotiorum + species + + - XANPAR + OIDMAI - 107463 - Xanthoria parietina + 78148 + Oidiodendron maius species - http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Xanthoria_parietina_%2806_03_31%29.jpg/800px-Xanthoria_parietina_%2806_03_31%29.jpg - 147541 - Dothideomycetes - class + 388435 + Lecanoromycetidae + subclass + + + CLAGRA + + 27339 + Cladonia grayi + Cladonia grayi Merr + species + http://upload.wikimedia.org/wikipedia/commons/b/b6/Cladonia_grayi-11.jpg + + + + XANPAR + + 107463 + Xanthoria parietina + species + http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Xanthoria_parietina_%2806_03_31%29.jpg/800px-Xanthoria_parietina_%2806_03_31%29.jpg + + + + + + + 147541 + Dothideomycetes + class + + + A class-wide phylogenetic assessment of Dothideomycetes + + + + 134362 + Capnodiales + order - - A class-wide phylogenetic assessment of Dothideomycetes - - 134362 - Capnodiales - order + 41254 + Mycosphaerella + genus + MYCFI - 41254 - Mycosphaerella - genus + 83344 + Mycosphaerella fijiensis + species - - MYCFI - - 83344 - Mycosphaerella fijiensis - species - - - - MYCGR - - 54734 - MYCGR - Mycosphaerella graminicola - Speckled leaf blotch fungus - Septoria tritici - species - - - - MYCPJ - - 64363 - MYCPJ - Mycosphaerella pini - Red band needle blight disease fungus - Dothistroma septosporum - Dothistroma pini - species - - - - MYCPOP - - 85929 - Mycosphaerella populorum - Septoria musiva - species - - - BAUCOM + MYCGR - 430998 - Baudoinia compniacensis + 54734 + MYCGR + Mycosphaerella graminicola + Speckled leaf blotch fungus + Septoria tritici species - http://www.diark.org/img/species_pict/Baudoinia_compniacensis + + + + MYCPJ + + 64363 + MYCPJ + Mycosphaerella pini + Red band needle blight disease fungus + Dothistroma septosporum + Dothistroma pini + species + + + + + 692275 + MPSXX + Mycosphaerella populorum SO2202 + Septoria musiva SO2202 + http://genome.jgi-psf.org/public/Sepmu1/Septoria-musiva-colony-abundantly-sporulating-2.jpg - 715340 - Pleosporineae - suborder + 430998 + BCOXX + Baudoinia compniacensis + species + http://www.botanicalgarden.ubc.ca/potd/images/2011/baudoinia-compniacensis2.jpg + + + + + + 715340 + Pleosporineae + suborder + + + + 28556 + Pleosporaceae + family - - 28556 - Pleosporaceae - family - + Cochliobolus & Setosphaeria - Cochliobolus & Setosphaeria + + 5015 + Cochliobolus + genus + + COCHE - 5015 - Cochliobolus - genus + 5016 + COCHE + Cochliobolus heterostrophus + Drechslera maydis + species - - COCHE - - 5016 - COCHE - Cochliobolus heterostrophus - Drechslera maydis - species - - - - - 45130 - COCSA - Cochliobolus sativus - Bipolaris sorokiniana - species - http://www.plantmanagementnetwork.org/pub/php/diagnosticguide/2003/rootrot/image/mathre6sm.jpg - - - 93612 - SETTU - Setosphaeria turcica - (Luttr.) K.J. Leonard & Suggs, (1974) - Northern corn leaf blight disease fungus - Exserohilum turcicum - Helminthosporium turcicum + 45130 + COCSA + Cochliobolus sativus + Bipolaris sorokiniana species - http://openi.nlm.nih.gov/imgs/rescaled512/3017769_1471-2229-10-103-3.png + http://www.plantmanagementnetwork.org/pub/php/diagnosticguide/2003/rootrot/image/mathre6sm.jpg - PYRTR - 426418 - PYRTR - Pyrenophora tritici-repentis (strain Pt-1C-BFP) - Wheat tan spot fungus - Drechslera tritici-repentis + 93612 + SETTU + Setosphaeria turcica + (Luttr.) K.J. Leonard & Suggs, (1974) + Northern corn leaf blight disease fungus + Exserohilum turcicum + Helminthosporium turcicum + species + http://openi.nlm.nih.gov/imgs/rescaled512/3017769_1471-2229-10-103-3.png - PHANO + PYRTR - 13684 - PHANO - Phaeosphaeria nodorum - Glume blotch fungus - Septoria nodorum - species + 426418 + PYRTR + Pyrenophora tritici-repentis (strain Pt-1C-BFP) + Wheat tan spot fungus + Drechslera tritici-repentis + + PHANO + + 13684 + PHANO + Phaeosphaeria nodorum + Glume blotch fungus + Septoria nodorum + species + + + + + + 28568 + Trichocomaceae + family + - 28568 - Trichocomaceae - family + 5052 + Aspergillus + genus - Neosartorya_Emericella + + Aspergillus flavus + - EMENI - 195546 - EMENI - Emericella nidulans - Vuill. 1927 - Aspergillus nidulans + 5059 + ASPFL + Aspergillus flavus + Link 1809 + Petromyces flavus species + http://www.schoolproject2.ewebsite.com/img/original/21/aspergillus-flavus.jpg - NEOFI - 331117 - NEOFI - Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) - Aspergillus fischerianus + 332952 + ASPFN + Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) + Aspergillus flavus NRRL3357 + ASPNG - 5052 - Aspergillus - genus + 5061 + ASPNG + Aspergillus niger + species - - - Aspergillus flavus - - - - 5059 - ASPFL - Aspergillus flavus - Link 1809 - Petromyces flavus - species - http://www.schoolproject2.ewebsite.com/img/original/21/aspergillus-flavus.jpg - - - - - 332952 - ASPFN - Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) - Aspergillus flavus NRRL3357 - - - - - ASPNG - - 5061 - ASPNG - Aspergillus niger - species - - - - - - 33183 - Onygenales - order - - - COCIM - - 5501 - COCIM - Coccidioides immitis - Valley fever fungus - species - - - UNCRE - - 336963 - UNCRE - Uncinocarpus reesii (strain UAMH 1704) - + Neosartorya_Emericella + + EMENI + + 195546 + EMENI + Emericella nidulans + Vuill. 1927 + Aspergillus nidulans + species + + + + NEOFI + + 331117 + NEOFI + Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) + Aspergillus fischerianus + + - 656061 - TUBMM - Tuber melanosporum (strain Mel28) - Perigord black truffle - Tuber melanosporum Mel28 - http://www.trufamania.com/trufas/Tuber%20melanosporum02.jpg + 33183 + Onygenales + order + + COCIM + + 5501 + COCIM + Coccidioides immitis + Valley fever fungus + species + + + + UNCRE + + 336963 + UNCRE + Uncinocarpus reesii (strain UAMH 1704) + + - 4892 - Saccharomycetales - budding yeasts - order + 656061 + TUBMM + Tuber melanosporum (strain Mel28) + Perigord black truffle + Tuber melanosporum Mel28 + http://www.trufamania.com/trufas/Tuber%20melanosporum02.jpg + + + + + 4892 + Saccharomycetales + budding yeasts + order + + + Candida & Debaryomyces & Saccharomycetacea - Candida & Debaryomyces & Saccharomycetacea + + 4893 + Saccharomycetaceae + family + - - 4893 - Saccharomycetaceae - family - + Saccharomyces_Pichia - Saccharomyces_Pichia + Saccharomyces - Saccharomyces - - SACCA - - 27288 - SACCA - Saccharomyces castellii - Yeast - Saccharomyces castellii - species - - - - YEAST - - 4932 - YEAST - Saccharomyces cerevisiae - Baker's yeast - species - - - - - PICAN + SACCA - 4905 - PICAN - Pichia angusta + 27288 + SACCA + Saccharomyces castellii Yeast - Hansenula polymorpha + Saccharomyces castellii species - - - Kluyveromyces & Ashbya - - Kluyveromyces - - KLULA - - 28985 - KLULA - Kluyveromyces lactis - Yeast - Candida sphaerica - species - - - - KLUWA - - 4914 - KLUWA - Kluyveromyces waltii - Yeast - species - - - - ASHGO + YEAST - 33169 - ASHGO - Ashbya gossypii - Yeast - Eremothecium gossypii + 4932 + YEAST + Saccharomyces cerevisiae + Baker's yeast species - - - Candida & Debaryomyces + PICAN - 5475 - Candida - genus + 4905 + PICAN + Pichia angusta + Yeast + Hansenula polymorpha + species + + + + Kluyveromyces & Ashbya + + Kluyveromyces - CANAL + KLULA - 5476 - CANAL - Candida albicans + 28985 + KLULA + Kluyveromyces lactis Yeast + Candida sphaerica species - CANTR + KLUWA - 5482 - CANTR - Candida tropicalis + 4914 + KLUWA + Kluyveromyces waltii Yeast species - DEBHA + ASHGO - 4959 - DEBHA - Debaryomyces hansenii + 33169 + ASHGO + Ashbya gossypii Yeast - Torulaspora hansenii + Eremothecium gossypii species - YARLI - - 4952 - YARLI - Yarrowia lipolytica - Candida lipolytica - species - - - - - - - 451866 - Taphrinomycotina - subphylum - - - Pneumocystidomycetes & Schizosaccharomycetes - - - 4895 - Schizosaccharomyces - genus - + Candida & Debaryomyces - SCHJP - 4897 - SCHJP - Schizosaccharomyces japonicus - Fission yeast - species - - - - - 4899 - SCHOT - Schizosaccharomyces octosporus - Fission yeast - species - http://www.dipbot.unict.it/sistematica/Immagini/12002.JPG + 5475 + Candida + genus + + CANAL + + 5476 + CANAL + Candida albicans + Yeast + species + + + + CANTR + + 5482 + CANTR + Candida tropicalis + Yeast + species + + - SCHPO + DEBHA - 4896 - SCHPO - Schizosaccharomyces pombe - Fission yeast + 4959 + DEBHA + Debaryomyces hansenii + Yeast + Torulaspora hansenii species + + + YARLI + + 4952 + YARLI + Yarrowia lipolytica + Candida lipolytica + species + + + + + + + 451866 + Taphrinomycotina + subphylum + + + Pneumocystidomycetes & Schizosaccharomycetes + + + 4895 + Schizosaccharomyces + genus + + + SCHJP + + 4897 + SCHJP + Schizosaccharomyces japonicus + Fission yeast + species + + - PNECA - 4754 - PNECA - Pneumocystis carinii + 4899 + SCHOT + Schizosaccharomyces octosporus + Fission yeast + species + http://www.dipbot.unict.it/sistematica/Immagini/12002.JPG + + + + SCHPO + + 4896 + SCHPO + Schizosaccharomyces pombe + Fission yeast species - SAICOM + PNECA - 5606 - Saitoella complicata + 4754 + PNECA + Pneumocystis carinii species + + + 5606 + Saitoella complicata + species + + + + + + 5204 + Basidiomycota + phylum + - - 5204 - Basidiomycota - phylum - + Agaricomycotina & Ustilaginomycotina & Pucciniomycotina - Agaricomycotina & Ustilaginomycotina & Pucciniomycotina + Agaricomycotina & Ustilaginomycotina - Agaricomycotina & Ustilaginomycotina + + 5302 + Agaricomycotina + - 5302 - Agaricomycotina + 155619 + Homobasidiomycetes + class + + Evolution of complex fruiting–body morphologies in homobasidiomycetes + - - 155619 - Homobasidiomycetes - class - - - Evolution of complex fruiting–body morphologies in homobasidiomycetes - + Agaricomycetidae & Gloeophyllum & Aphyllophorales - Agaricomycetidae & Gloeophyllum & Aphyllophorales + Agaricomycetidae & Gloeophyllum - Agaricomycetidae & Gloeophyllum + + 452333 + Agaricomycetidae + subclass + - - 452333 - Agaricomycetidae - subclass - + Agaricales & Boletales - Agaricales & Boletales + + 5338 + Agaricales + order + - - 5338 - Agaricales - order - + Agaricus & Coprinopsis & Laccaria & Pleurotus - Agaricus & Coprinopsis & Laccaria & Pleurotus + Agaricus & Coprinopsis & Laccaria - Agaricus & Coprinopsis & Laccaria + Agaricus & Coprinopsis - Agaricus & Coprinopsis - - AGABB - - 192524 - Agaricus bisporus var. burnettii - http://www.mykoweb.com/CAF/photos/Agaricus_bisporus(fs-03).jpg - - - - COPCI - - 5346 - COPCI - Coprinopsis cinerea - Inky cap fungus - Hormographiella aspergillata - species - http://upload.wikimedia.org/wikipedia/commons/e/e9/Coprinopsis.cinerea.-.lindsey.jpg - - + + 597362 + AGABU + Agaricus bisporus var. burnettii (strain JB137-S8 / ATCC MYA-4627 / FGSC 10392) + White button mushroom + Agaricus bisporus var. burnettii JB137-S8 + http://www.mykoweb.com/CAF/photos/Agaricus_bisporus(fs-03).jpg + + COPCI - 29883 - LACBI - Laccaria bicolor - Bicoloured deceiver - Laccaria laccata var. bicolor + 5346 + COPCI + Coprinopsis cinerea + Inky cap fungus + Hormographiella aspergillata species - http://botit.botany.wisc.edu/toms_fungi/images/L_bicolor_NM.JPG + http://upload.wikimedia.org/wikipedia/commons/e/e9/Coprinopsis.cinerea.-.lindsey.jpg - GYMLUX - 206324 - Gymnopus luxurians + 29883 + LACBI + Laccaria bicolor + Bicoloured deceiver + Laccaria laccata var. bicolor species - http://www.mushroomexpert.com/images/kuo3/gymnopus_luxurians_02.jpg + http://botit.botany.wisc.edu/toms_fungi/images/L_bicolor_NM.JPG - PLEOS - 5322 - PLEOS - Pleurotus ostreatus - Oyster mushroom - White-rot fungus + 206324 + Gymnopus luxurians species - http://botit.botany.wisc.edu/toms_fungi/images/post1.jpg + http://www.mushroomexpert.com/images/kuo3/gymnopus_luxurians_02.jpg + PLEOS - 68889 - Boletales - Melanogastrales - Sclerodermatales - order + 5322 + PLEOS + Pleurotus ostreatus + Oyster mushroom + White-rot fungus + species + http://botit.botany.wisc.edu/toms_fungi/images/post1.jpg + + + + + + 68889 + Boletales + Melanogastrales + Sclerodermatales + order + + + + 227334 + Coniophorineae + suborder - 227334 - Coniophorineae - suborder + 80637 + CPUXX + Coniophora puteana + Schum. ex Fries + cellar fungus + species + http://genome.jgi-psf.org/public/Conpu1/P1240066_dp.jpg - - CONPUT - - 80637 - Coniophora puteana - Schum. ex Fries - cellar fungus - species - http://genome.jgi-psf.org/public/Conpu1/P1240066_dp.jpg - - - - SERLAC - - 85982 - Serpula lacrymans - dry rot fungus - species - http://www.anbg.gov.au/fungi/images/0160.jpg - - - HYDPIN - 388859 - Hydnomerulius pinastri - Spiny dry rot fungus - species - http://mycoweb-stv.narod.ru/fungi/Submitted/STV1/Hydnomerulius_pinastri_1_STV_20100913.jpg + 578457 + SERL9 + Serpula lacrymans var. lacrymans (strain S7.9) + Dry rot fungus + http://www.anbg.gov.au/fungi/images/0160.jpg - - - JAAARG - - 202697 - Jaapia argillacea - species - http://mycor.nancy.inra.fr/blogGenomes/wp-content/uploads/2012/08/IMG_21261.jpg - + + + 388859 + Hydnomerulius pinastri + Spiny dry rot fungus + species + http://mycoweb-stv.narod.ru/fungi/Submitted/STV1/Hydnomerulius_pinastri_1_STV_20100913.jpg + + - GLOTR - 104355 - GLOTR - Gloeophyllum trabeum - Brown rot fungus + 202697 + Jaapia argillacea species - http://www.commanster.eu/commanster/Mushrooms/Basidio/SpBasidio/Gloeophyllum.trabeum.jpg + http://mycor.nancy.inra.fr/blogGenomes/wp-content/uploads/2012/08/IMG_21261.jpg + GLOTR - 5303 - Aphyllophorales - Gäum. (1926) - Shelf Fungi - Polyporales - order + 104355 + GLOTR + Gloeophyllum trabeum + Brown rot fungus + species + http://www.commanster.eu/commanster/Mushrooms/Basidio/SpBasidio/Gloeophyllum.trabeum.jpg + + + + + + 5303 + Aphyllophorales + Gäum. (1926) + Shelf Fungi + Polyporales + order + + + + 83233 + Coriolaceae + family + + The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (Homobasidiomycetes) + + + + + - - 83233 - Coriolaceae - family - - - The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (Homobasidiomycetes) - - - - - + Postia & Fomitopsis & Wolfiporia & Trametes - Postia & Fomitopsis & Wolfiporia & Trametes + Antrodia clade + + Antrodia clade + - Antrodia clade - Antrodia clade + 40483 + FPIXX + Fomitopsis pinicola + (Swartz) P. Karsten + Red banded polypore + Fomes pinicola + Boletus pinicola + species + http://www.mykoweb.com/CAF/photos/Fomitopsis_pinicola(mgw-02).jpg - - FOMPIN - - 40483 - Fomitopsis pinicola - P. Karst. 1881 - Red banded polypore - Fomes pinicola - species - http://content6.eol.org/content/2009/06/07/01/48471_large.jpg - - - - POSPL - - 104341 - Postia placenta - species - http://www.commanster.eu/commanster/Mushrooms/Polypore/SuPolypore/Postia.placenta.jpg - - - core polyporoid clade - core polyporoid clade + 104341 + PPLXX + Postia placenta + Rhodonia placenta + species + http://www.commanster.eu/commanster/Mushrooms/Polypore/SuPolypore/Postia.placenta.jpg - - TRAVE - - 5325 - TRAVE - Trametes versicolor - (L.) Lloyd 1921 - White-rot fungus - Coriolus versicolor - Bjerkandera versicolor - species - http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-1).jpg - http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-2).jpg - http://www.mykoweb.com/CAF/photos/Trametes_versicolor(mgw-01).jpg - http://genome.jgi-psf.org/public/Trave1/Trametes_versicolor.JPG - - - - WOLCOC - - 81056 - Wolfiporia cocos - species - http://toolate.s7.coreserver.jp/kinoko/fungi/wolfiporia_cocos/w_cocos_002.jpg - - - CERSU + core polyporoid clade - 42742 - CERSU - Ceriporiopsis subvermispora - species + core polyporoid clade + + + 5325 + TRAVE + Trametes versicolor + (L.) Lloyd 1921 + White-rot fungus + Coriolus versicolor + Bjerkandera versicolor + species + http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-1).jpg + http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-2).jpg + http://www.mykoweb.com/CAF/photos/Trametes_versicolor(mgw-01).jpg + + + + + 742152 + WOLCO + Wolfiporia cocos (strain MD-104) + Brown rot fungus + Wolfiporia cocos MD-104 SS10 + http://genome.jgi-psf.org/public/Wolco1/W_cocos_CA-b1.jpg + + - DICSQU + CERSU - 114155 - Dichomitus squalens - (P. Karst.) D. A. Reid 1965 - Red rot - Polyporus anceps + 42742 + CERSU + Ceriporiopsis subvermispora species - http://www.fs.fed.us/r3/resources/health/field-guide/images/large/sds-f199-large.jpg - - - HETAN - - 13563 - HETAN - Heterobasidion annosum - Root rot fungus - species - + + + 732165 + DICSQ + Dichomitus squalens (strain LYAD-421) + Western red white-rot fungus + Dichomitus squalens LYAD-421 SS1 + http://www.fs.fed.us/r3/resources/health/field-guide/images/large/sds-f199-large.jpg + + + HETAN - 5215 - Tremellaceae - family + 13563 + HETAN + Heterobasidion annosum + Root rot fungus + species - - CRYNE - - 5207 - CRYNE - Cryptococcus neoformans - Filobasidiella neoformans - species - - - - TREME - - 1029985 - TREME - Tremella mesenterica - Pers. 1800 - Jelly fungus - Yellow Brain - Tremella lutescens - species - - - 452284 - Ustilaginomycotina - subphylum + 5215 + Tremellaceae + family + CRYNE - 425265 - MALGO - Malassezia globosa (strain ATCC MYA-4612 / CBS 7966) - Dandruff-associated fungus + 5207 + CRYNE + Cryptococcus neoformans + Filobasidiella neoformans + species - USTMA + TREME - 5270 - USTMA - Ustilago maydis - Smut fungus + 1029985 + TREME + Tremella mesenterica + Pers. 1800 + Jelly fungus + Yellow Brain + Tremella lutescens species @@ -3166,248 +3142,279 @@ - 29000 - Pucciniomycotina + 452284 + Ustilaginomycotina subphylum - 5258 - Pucciniales - rusts - order + 425265 + MALGO + Malassezia globosa (strain ATCC MYA-4612 / CBS 7966) + Dandruff-associated fungus - - MELLP - - 156696 - MELLP - Melampsora laricis-populina - Kleb. 1902 - Melampsora larici-populina - Melampsora laricipopulina - species - - - - PUCGR - - 1029947 - PUCGR - Puccinia graminis - Pers. 1794 - Black stem rust fungus - Wheat rust - species - - + USTMA - 89013 - mitosporic Sporidiobolales + 5270 + USTMA + Ustilago maydis + Smut fungus + species - - RHOGR - - 29898 - RHOGR - Rhodotorula graminis - Yeast - species - - - - SPORO - - 1013696 - Sporobolomyces roseus - Kluyver & C. B. Niel 1924 - species - - - WALSE - 148960 - WALSE - Wallemia sebi - species + 29000 + Pucciniomycotina + subphylum + + + 5258 + Pucciniales + rusts + order + + + MELLP + + 156696 + MELLP + Melampsora laricis-populina + Kleb. 1902 + Melampsora larici-populina + Melampsora laricipopulina + species + + + + PUCGR + + 1029947 + PUCGR + Puccinia graminis + Pers. 1794 + Black stem rust fungus + Wheat rust + species + + + + + + 89013 + mitosporic Sporidiobolales + + + RHOGR + + 29898 + RHOGR + Rhodotorula graminis + Yeast + species + + + + + 40563 + SPORO + Sporobolomyces roseus + Kluyver & C. B. Niel 1924 + species + + + + + WALSE + + 148960 + WALSE + Wallemia sebi + species + + + + + + 451507 + Mucoromycotina + subphylum + - 451507 - Mucoromycotina - subphylum + 34489 + Mucoraceae + family + MUCCI - 34489 - Mucoraceae - family + 36080 + MUCCI + Mucor circinelloides + Mucor griseo-roseus + species + + + + PHYBL + + 4837 + PHYBL + Phycomyces blakesleeanus + species - - MUCCI - - 36080 - MUCCI - Mucor circinelloides - Mucor griseo-roseus - species - - - - PHYBL - - 4837 - PHYBL - Phycomyces blakesleeanus - species - - - - RHIOR - - 64495 - RHIOR - Rhizopus oryzae - Rhizopus delemar - species - - + RHIOR - 1069443 - MVNXX - Mortierella verticillata NRRL 6337 + 64495 + RHIOR + Rhizopus oryzae + Rhizopus delemar species - http://www.ual.es/GruposInv/myco-ual/galeria17/mortierella.jpg - http://www.diark.org/img/species_pict/Mortierella_verticillata - - - COEREV - - 61392 - Coemansia reversa - species - + + + 1069443 + MVNXX + Mortierella verticillata NRRL 6337 + species + http://www.ual.es/GruposInv/myco-ual/galeria17/mortierella.jpg + http://www.diark.org/img/species_pict/Mortierella_verticillata + + - 28583 - ALLMA - Allomyces macrogynus + 61392 + Coemansia reversa species - 4761 - Chytridiomycota - chytrids - Mastigomycotina - phylum + 28583 + ALLMA + Allomyces macrogynus + species - - - 451435 - Chytridiomycetes - class - - - - 109871 - BATDE - Batrachochytrium dendrobatidis - Frog chytrid fungus - species - - - - - 109760 - SPIPN - Spizellomyces punctatus - species - - + + + + + 4761 + Chytridiomycota + chytrids + Mastigomycotina + phylum + + + + 451435 + Chytridiomycetes + class + + + + 109871 + BATDE + Batrachochytrium dendrobatidis + Frog chytrid fungus + species + - GONPRO - 157984 - Gonapodya prolifera - A. Fisch. 1892 + 109760 + SPIPN + Spizellomyces punctatus species - http://genome.jgi-psf.org/public/Ganpr1/Picture5.jpg - - - PIRSPE - - 73868 - Piromyces sp. E2 - species - http://www.bsu.edu/classes/ruch/msa/barr/4-17.jpg - + + + 1123529 + GONPR + Gonapodya prolifera + A. Fisch. 1892 + Aquatic fungus + species + http://genome.jgi-psf.org/public/Ganpr1/Picture5.jpg + + - ENCCU - 6035 - ENCCU - Encephalitozoon cuniculi - Microsporidian parasite + 73868 + PIRSE + Piromyces sp. (strain E2) species + http://www.bsu.edu/classes/ruch/msa/barr/4-17.jpg - Fonticula & Nucleariidae - - + + 6033 + Encephalitozoon + genus + - FONALB - 691883 - Fonticula alba - Fonticula alba Worley, Raper & Hohl. 1979 + 6035 + ENCCU + Encephalitozoon cuniculi (strain GB-M1) + Microsporidian parasite species + http://www.nature.com/modpathol/journal/v15/n5/images/3880566f7.jpg - NUCSIM - 154970 - Nuclearia simplex - species + 907965 + ENCHA + Encephalitozoon hellem (strain ATCC 50504) + Microsporidian parasite + http://ruby.fgcu.edu/courses/davidb/50249/web/Encephalitozoonhellem91.jpg - - - THETRA - - 529818 - Thecamonas trahens - species - + + Fonticula & Nucleariidae + + + + + 691883 + Fonticula alba + Fonticula alba Worley, Raper & Hohl. 1979 + species + + + + + 154970 + Nuclearia simplex + species + + + @@ -3460,7 +3467,7 @@ - Corticata + Plants+HC+SAR megagroup Plants+HC @@ -3866,122 +3873,142 @@ - 4479 - Poaceae - grass family - Gramineae - family + 4447 + Liliopsida + monocots + Monocotyledoneae + class - 147369 - Panicoideae - Link, 1827 - Centothecoideae - subfamily + 4479 + Poaceae + grass family + Gramineae + family - 147429 - Andropogoneae - Dumort., 1824 - tribe + 147369 + Panicoideae + Link, 1827 + Centothecoideae + subfamily - SORBI - 4558 - SORBI - Sorghum bicolor - Sorghum - Sorghum vulgare - species + 147429 + Andropogoneae + Dumort., 1824 + tribe + + SORBI + + 4558 + SORBI + Sorghum bicolor + Sorghum + Sorghum vulgare + species + + + + MAIZE + + 4577 + MAIZE + Zea mays + Maize + species + + - MAIZE - 4577 - MAIZE - Zea mays - Maize - species + 147428 + Paniceae + tribe + + PANVIR + + 38727 + Panicum virgatum + switchgrass + species + http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/PanicumVirgatum.jpg/220px-PanicumVirgatum.jpg + + + + SETIT + + 4555 + SETIT + Setaria italica + Foxtail millet + Panicum italicum + species + http://en.academic.ru/pictures/enwiki/83/Setaria_italica0.jpg + + - 147428 - Paniceae - tribe + 359160 + BEP clade - PANVIR - 38727 - Panicum virgatum - switchgrass - species - http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/PanicumVirgatum.jpg/220px-PanicumVirgatum.jpg + 4527 + Oryza + genus + + ORYSA + + 4530 + ORYSA + Oryza sativa + Rice + species + + + + ORYSJ + + 39947 + ORYSJ + Oryza sativa subsp. japonica + Rice + + - SETIT + BRADI - 4555 - SETIT - Setaria italica - Foxtail millet - Panicum italicum + 15368 + BRADI + Brachypodium distachyon + Purple false brome + Trachynia distachya species - http://en.academic.ru/pictures/enwiki/83/Setaria_italica0.jpg + http://content5.eol.org/content/2011/01/15/20/16311_large.jpg - 359160 - BEP clade + 4641 + MUSAC + Musa acuminata + Banana + Musa cavendishii + species + http://upload.wikimedia.org/wikipedia/commons/f/fd/Musa_acuminata1.jpg - - - 4527 - Oryza - genus - - - ORYSA - - 4530 - ORYSA - Oryza sativa - Rice - species - - - - ORYSJ - - 39947 - ORYSJ - Oryza sativa subsp. japonica - Rice - - - - - BRADI - - 15368 - BRADI - Brachypodium distachyon - Purple false brome - Trachynia distachya - species - http://content5.eol.org/content/2011/01/15/20/16311_large.jpg - - @@ -4132,13 +4159,13 @@ - VOLCA 3067 VOLCA Volvox carteri Green alga species + http://genome.jgi-psf.org/Volca1/Volvox.jpg @@ -4146,27 +4173,86 @@ - CYAME - 45157 - CYAME - Cyanidioschyzon merolae - Red alga - species - http://merolae.biol.s.u-tokyo.ac.jp/ + 2763 + Rhodophyta + red algae + + + 265316 + Cyanidiaceae + family + + + + 45157 + CYAME + Cyanidioschyzon merolae + Red alga + species + http://www.shigen.nig.ac.jp/algae_tree/CyanidiophyceaeIMG.jpg + + + + + 130081 + GALSU + Galdieria sulphuraria + Red alga + species + http://phenomena.nationalgeographic.com/files/2013/03/Alga.jpg + + + + + + 2769 + CHOCR + Chondrus crispus + Carragheen moss + species + http://www.seaweed.ie/_images/MG3_0485.png + + - 2762 - CYAPA - Cyanophora paradoxa - species - http://www.people.vcu.edu/~rfisher/paradoxa.jpg + 38254 + Glaucocystophyceae + Glaucophyta + class + + + 2762 + CYAPA + Cyanophora paradoxa + species + http://www.people.vcu.edu/~rfisher/paradoxa.jpg + + + + + 38271 + Glaucocystis nostochinearum + species + http://protist.i.hosei.ac.jp/pdb/images/Others/Glaucocystis/sp_02.jpg + + + Hacrobia (Cryptophyta & Haptophyceae & Centroheliozoa) + + + 2903 + EMIHU + Emiliania huxleyi + species + http://research.kahaku.go.jp/zoology/kaisei/hp-2/images/hapto.jpg + + 55529 @@ -4182,322 +4268,360 @@ - - EMIHU - - 2903 - EMIHU - Emiliania huxleyi - species - - - Heterokonta & Alveolata + Stramenopiles & Alveolata & Rhizaria + + Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists + + + - - 33630 - Alveolata - + Stramenopiles & Alveolata - 5794 - Apicomplexa - phylum + 33630 + Alveolata - 422676 - Aconoidasida - class + 5794 + Apicomplexa + phylum - 5820 - Plasmodium - genus + 422676 + Aconoidasida + class - PLACH - - 5825 - PLACH - Plasmodium chabaudi - species - - - - PLAFA - 5833 - PLAFA - Plasmodium falciparum - species + 5820 + Plasmodium + genus + + PLACH + + 5825 + PLACH + Plasmodium chabaudi + species + + + + PLAFA + + 5833 + PLAFA + Plasmodium falciparum + species + + + + PLAYO + + 73239 + PLAYO + Plasmodium yoelii yoelii + subspecies + + - PLAYO + Theileria - 73239 - PLAYO - Plasmodium yoelii yoelii - subspecies + 5873 + Theileria + genus + + THEAN + + 5874 + THEAN + Theileria annulata + species + + + + THEPA + + 5875 + THEPA + Theileria parva + species + + - Theileria - 5873 - Theileria - genus + 423054 + Eimeriorina + suborder - THEAN - 5874 - THEAN - Theileria annulata - species + 5806 + Cryptosporidium + genus + + CRYHO + + 237895 + CRYHO + Cryptosporidium hominis + species + + + + CRYPV + + 5807 + CRYPV + Cryptosporidium parvum + species + + - THEPA - - 5875 - THEPA - Theileria parva - species - + Eimeria & Toxoplasma + + The Apicomplexan Whole-Genome Phylogeny: An Analysis of Incongruence among Gene Trees + + + + + + 5802 + EIMTE + Eimeria tenella + Coccidian parasite + species + http://www.k-state.edu/parasitology/625tutorials/FIGtenella.jpg + + + + TOXGO + + 5811 + TOXGO + Toxoplasma gondii + species + + - 423054 - Eimeriorina - suborder + 431838 + Intramacronucleata + subphylum - 5806 - Cryptosporidium - genus + 6020 + Oligohymenophorea + class - CRYHO - - 237895 - CRYHO - Cryptosporidium hominis - species - - - - CRYPV + PARTE - 5807 - CRYPV - Cryptosporidium parvum + 5888 + PARTE + Paramecium tetraurelia species - - - - - Eimeria & Toxoplasma - - The Apicomplexan Whole-Genome Phylogeny: An Analysis of Incongruence among Gene Trees - - - - - - 5802 - EIMTE - Eimeria tenella - Coccidian parasite - species - http://www.k-state.edu/parasitology/625tutorials/FIGtenella.jpg - - - - TOXGO - - 5811 - TOXGO - Toxoplasma gondii - species - - - - - - - - 6020 - Oligohymenophorea - class - - - PARTE - - 5888 - PARTE - Paramecium tetraurelia - species - - - - TETTH - - 5911 - TETTH - Tetrahymena thermophila - species - + + + + TETTH + + 5911 + TETTH + Tetrahymena thermophila + species + + + + + + 1172189 + Oxytricha trifallax + Stein, 1859 + species + http://centexnaturalist.com/foldermainmenus/sfprotists/folderprotozoans/oxytricha04.gif + + - - - - 33634 - Stramenopiles - Patterson 1989, emend. Adl et al. 2005 - Chromophyta - heterokonts - - Pelagophyceae & Bacillariophyta & Oomycetes + 33634 + Stramenopiles + Patterson 1989, emend. Adl et al. 2005 + Chromophyta + heterokonts - - Seven Gene Phylogeny of Heterokonts - - - - Pelagophyceae & Bacillariophyta + Pelagophyceae & Bacillariophyta & Oomycetes + + Seven Gene Phylogeny of Heterokonts + + + - - 2836 - Bacillariophyta - diatoms - phylum - + Pelagophyceae & Bacillariophyta - 33850 - Bacillariophycidae + 2836 + Bacillariophyta + diatoms + phylum - FRACY - 186039 - FRACY - Fragilariopsis cylindrus - Krieger - Nitzschia cylindrus - species - http://www.awi.de/fileadmin/user_upload/News/Press_Releases/2012/1._Quartal/000_Fragilariposis_Chloroplasten_GDieckmann_w.jpg + 33850 + Bacillariophycidae + + FRACY + + 186039 + FRACY + Fragilariopsis cylindrus + Krieger + Nitzschia cylindrus + species + http://www.awi.de/fileadmin/user_upload/News/Press_Releases/2012/1._Quartal/000_Fragilariposis_Chloroplasten_GDieckmann_w.jpg + + + + PHATR + + 912693 + PHATR + Phaeodactylum tricornutum + Bohlin + species + + - PHATR - 912693 - PHATR - Phaeodactylum tricornutum - Bohlin + 35128 + THAPS + Thalassiosira pseudonana + Hasle & Heimdal + Marine diatom + Cyclotella nana species + http://www.genomenewsnetwork.org/gnn_images/sequenced_genomes/thalassiosira_pseudonana.jpg - 35128 - THAPS - Thalassiosira pseudonana - Hasle & Heimdal - Marine diatom - Cyclotella nana + 912461 + AURAN + Aureococcus anophagefferens + Hargraves & Sieburth species - http://www.genomenewsnetwork.org/gnn_images/sequenced_genomes/thalassiosira_pseudonana.jpg - 912461 - AURAN - Aureococcus anophagefferens - Hargraves & Sieburth - species + 4783 + Phytophthora + genus + + + 4787 + PHYIN + Phytophthora infestans + (Mont.) de Bary 1876 + Potato late blight fungus + species + http://bioweb.uwlax.edu/bio203/s2007/benrud_jaco/index_files/image4901.jpg + + + + + 164328 + PHYRM + Phytophthora ramorum + Sudden oak death agent + species + + + + + 67593 + PHYSO + Phytophthora sojae + Soybean stem and root rot agent + Phytophthora megasperma f. sp. glycines + species + http://genome.jgi-psf.org/Physo1_1/pramorum.jpg + + - 4783 - Phytophthora - genus + 33674 + Thraustochytriaceae + Thraustochytriales + family - 4787 - PHYIN - Phytophthora infestans - (Mont.) de Bary 1876 - Potato late blight fungus - species - http://bioweb.uwlax.edu/bio203/s2007/benrud_jaco/index_files/image4901.jpg - - - - - 164328 - PHYRM - Phytophthora ramorum - Sudden oak death agent - species + 702273 + AKEXX + Aplanochytrium kerguelense PBS07 + http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Aplanolm.jpg/120px-Aplanolm.jpg - 67593 - PHYSO - Phytophthora sojae - Soybean stem and root rot agent - Phytophthora megasperma f. sp. glycines - species - http://genome.jgi-psf.org/Physo1_1/pramorum.jpg + 876976 + SAGXX + Schizochytrium aggregatum ATCC 28209 + http://genome.jgi-psf.org/public/Schag1/120124-ATCC28209-22.JPG + + + + 543769 + Rhizaria + - 33674 - Thraustochytriaceae - Thraustochytriales - family + 71427 + Allogromia laticollaris + species + http://forambarcoding.unige.ch/system/pictures/424/s600/A.laticollaris1.jpg + + + + + 227086 + BIGNA + Bigelowiella natans + Chlorarachnion sp. (strain CCMP621) + Pedinomonas minutissima + species + http://genome.jgi.doe.gov/Bigna1/Bigna1.jpg - - - 702273 - AKEXX - Aplanochytrium kerguelense PBS07 - http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Aplanolm.jpg/120px-Aplanolm.jpg - - - - - 876976 - SAGXX - Schizochytrium aggregatum ATCC 28209 - http://genome.jgi-psf.org/public/Schag1/120124-ATCC28209-22.JPG - - @@ -4507,7 +4631,7 @@ - Kinetoplastida_Heterolobosea + Kinetoplastida & Heterolobosea 5654 @@ -4568,6 +4692,35 @@ + + + 554296 + Apusozoa + + + Planomonadida ord. nov. (Apusozoa): Ultrastructural Affinity with Micronuclearia podoventralis and Deep Divergences within Planomonas gen. nov + + + + 554453 + Planomonas micra + (Cavalier-Smith, 2008) Heiss, Walker & Simpson 2010 + Apusomonadidae sp. micra + species + + + + + 529818 + TTRXX + Thecamonas trahens + Larsen & Patterson 1990 + Amastigomonas trahens + species + http://bioinformatica.upf.edu/2011/projectes11/Cx/images/pro_t_tra.jpg + + + @@ -5928,68 +6081,6 @@ Chloroflexi & Actinobacteria - 200795 - Chloroflexi - GNS bacteria - Thermomicrobia - phylum - - - - 32061 - Chloroflexi (class) - Chloroflecales - Chloroflexus/Deinococcus group - class - - - b_122 - - 1106 - Chloroflexaceae - filamentous anoxygenic phototrophic bacteria - family - - - CHLAU - - 1108 - CHLAU - Chloroflexus aurantiacus - species - - - - - 383372 - ROSCS - Roseiflexus castenholzii (strain DSM 13941 / HLO8) - species - - - - - HERAU - - 65 - HERAU - Herpetosiphon aurantiacus - Herpetosiphon giganteus - species - - - - - - 479434 - SPHTD - Sphaerobacter thermophilus (strain DSM 20745 / S 6022) - strain - - - - - 201174 Actinobacteria phylum @@ -6019,6 +6110,15 @@ + + 1032480 + MICPN + Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) + Microlunatus phosphovorus NM-1 + strain + + + STRCO 1902 @@ -6035,15 +6135,6 @@ Thermobifida fusca (strain YX) - - - 1032480 - MICPN - Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) - Microlunatus phosphovorus NM-1 - strain - - @@ -6103,6 +6194,68 @@ + + + 200795 + Chloroflexi + GNS bacteria + Thermomicrobia + phylum + + + + 32061 + Chloroflexi (class) + Chloroflecales + Chloroflexus/Deinococcus group + class + + + b_122 + + 1106 + Chloroflexaceae + filamentous anoxygenic phototrophic bacteria + family + + + CHLAU + + 1108 + CHLAU + Chloroflexus aurantiacus + species + + + + + 383372 + ROSCS + Roseiflexus castenholzii (strain DSM 13941 / HLO8) + species + + + + + HERAU + + 65 + HERAU + Herpetosiphon aurantiacus + Herpetosiphon giganteus + species + + + + + + 479434 + SPHTD + Sphaerobacter thermophilus (strain DSM 20745 / S 6022) + strain + + + b_132 @@ -6945,17 +7098,17 @@ - 452659 - RICRO - Rickettsia rickettsii (strain Iowa) - strain + 391896 + RICB8 + Rickettsia bellii (strain OSU 85-389) - 391896 - RICB8 - Rickettsia bellii (strain OSU 85-389) + 452659 + RICRO + Rickettsia rickettsii (strain Iowa) + strain -- 1.7.10.2