From 60b63ec67604be95d1be4ff04e51c5705b05b109 Mon Sep 17 00:00:00 2001
From: Jim Procter <jprocter@issues.jalview.org>
Date: Sat, 5 Sep 2015 18:37:17 +0100
Subject: [PATCH] JAL-1871 reinstate random generation of palette when
 applying RNA Helices colouring

---
 src/jalview/schemes/RNAHelicesColour.java |    2 ++
 1 file changed, 2 insertions(+)

diff --git a/src/jalview/schemes/RNAHelicesColour.java b/src/jalview/schemes/RNAHelicesColour.java
index 74cc803..ffc013d 100644
--- a/src/jalview/schemes/RNAHelicesColour.java
+++ b/src/jalview/schemes/RNAHelicesColour.java
@@ -61,12 +61,14 @@ public class RNAHelicesColour extends ResidueColourScheme
   {
     super(ResidueProperties.nucleotideIndex);
     this.annotation = annotation;
+    ColourSchemeProperty.resetRnaHelicesShading();
     refresh();
   }
 
   public RNAHelicesColour(AnnotatedCollectionI alignment)
   {
     super(ResidueProperties.nucleotideIndex);
+    ColourSchemeProperty.resetRnaHelicesShading();
     alignmentChanged(alignment, null);
   }
 
-- 
1.7.10.2