From 619cc880371f3228e6a1fb33c6bfb6e7a7e2622c Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Thu, 10 Sep 2015 04:40:52 +0100 Subject: [PATCH] JAL-1684 updated example to just a fragment of the estrogen sequences --- examples/applets.html | 8 ++++---- examples/estrogenReceptorCdna_frag.fa | 12 ++++++++++++ examples/estrogenReceptorProtein_frag.fa | 14 ++++++++++++++ 3 files changed, 30 insertions(+), 4 deletions(-) create mode 100644 examples/estrogenReceptorCdna_frag.fa create mode 100644 examples/estrogenReceptorProtein_frag.fa diff --git a/examples/applets.html b/examples/applets.html index 8d32d5f..3dfa83a 100644 --- a/examples/applets.html +++ b/examples/applets.html @@ -178,8 +178,8 @@ Try out JalviewLite by pressing one of the buttons below.
code="jalview.bin.JalviewLite" width="140" height="35" archive="jalviewApplet.jar,JmolApplet-14.2.14_2015.06.11.jar,java-json.jar,json_simple-1.1.jar"> - - + + @@ -192,8 +192,8 @@ Try out JalviewLite by pressing one of the buttons below.
value="http://www.jalview.org/services/launchApp"/> - Displays a split window view of protein - and its related cDNA.
Proteins were aligned with Displays a split window view showing aligned protein + and a reconstructed cDNA alignment.
Proteins were aligned with
Muscle (version 3.8.31, via the Jalvew Desktop).
Data retrieved from Uniprot and ENA, after Thornton, Need and Crews, EMBLCDS|BAA89539/1111-1224 Anguilla japonica (Japanese eel) progesterone receptor +gaaggccatcataactacttgtgtgctggacggaatgactgcatcgtggacaagatccgtaggaaaaactgt +cctgcttgtcgcctcagaaagtgctaccaggcgggaatgata--- +>EMBLCDS|BAA75464/1564-1677 Anguilla japonica (Japanese eel) androgen receptor alpha +gaagggaaacagaagtacctgtgcgccagcatcaatgattgcaccattgataaacttcgaaggaagaactgc +ccctcttgccgtctcaaaaggtgctttgctgccggaatgacc--- +>EMBLCDS|AAA17402/70-183 Serinus canaria (common canary) partial androgen receptor +gaaggtaaacagaagtacctctgtgccagccgcaacgactgcaccatcgacaagttccggcggaaaaactgc +ccctcctgccgcctgcgcaagtgctacgaggccgggatgacg--- +>EMBLCDS|AAK20929/592-708 Petromyzon marinus (sea lamprey) partial estrogen receptor +caaggccacaatgactacatgtgcccggccaccaaccagtgcaccatcgacaggaaccgtcgcaagagctgt +caggcttgccgcctgcgtaagtgctacgaagtgggcatggtcaaa diff --git a/examples/estrogenReceptorProtein_frag.fa b/examples/estrogenReceptorProtein_frag.fa new file mode 100644 index 0000000..cb3c37e --- /dev/null +++ b/examples/estrogenReceptorProtein_frag.fa @@ -0,0 +1,14 @@ +>UNIPROT|Q7LCB3/249-274 +---SLEHTLPVNRETLKRKVSGNRCASPV---------- +>UNIPROT|Q9VSE9/175-200 +---GSGTSGGNGGGGGGGTSGGNATNASA---------- +>UNIPROT|Q9IBD5/371-408 +EGHHNYLCAGRNDCIVDKIRRKNCPACRLRKCYQAGMI- +>UNIPROT|Q9YGV9/522-559 +EGKQKYLCASINDCTIDKLRRKNCPSCRLKRCFAAGMT- +>UNIPROT|Q90ZM7/97-134 +EGQHNYLCAGRNDCIIDKIRRKNCPACRLRKCIQAGMT- +>UNIPROT|Q91445/24-61 +EGKQKYLCASRNDCTIDKFRRKNCPSCRLRKCYEAGMT- +>UNIPROT|Q90ZM8/198-236 +QGHNDYMCPATNQCTIDRNRRKSCQACRLRKCYEVGMVK -- 1.7.10.2