From 62d2ee96fc3876b3773e786596bc5bf3ed2388df Mon Sep 17 00:00:00 2001 From: gmungoc Date: Fri, 20 Oct 2017 10:22:26 +0100 Subject: [PATCH] JAL-2755 update caller for method rename! --- src/jalview/io/vcf/VCFLoader.java | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/src/jalview/io/vcf/VCFLoader.java b/src/jalview/io/vcf/VCFLoader.java index 6309fe7..e381b26 100644 --- a/src/jalview/io/vcf/VCFLoader.java +++ b/src/jalview/io/vcf/VCFLoader.java @@ -855,7 +855,8 @@ public class VCFLoader * call (e.g.) http://rest.ensembl.org/map/human/GRCh38/17:45051610..45109016:1/GRCh37 */ EnsemblMap mapper = new EnsemblMap(); - int[] mapping = mapper.getMapping(species, chromosome, fromRef, toRef, + int[] mapping = mapper.getAssemblyMapping(species, chromosome, fromRef, + toRef, queryRange); if (mapping == null) -- 1.7.10.2