From 63747d835b0d6b1e4b3d3d5dd99561af191ee1a9 Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Mon, 28 Feb 2022 17:57:49 +0000 Subject: [PATCH] =?utf8?q?JAL-3746=20JAL-3551=20update=20pymol=20docs=20and=20?= =?utf8?q?what=E2=80=99s=20new=20text?= MIME-Version: 1.0 Content-Type: text/plain; charset=utf8 Content-Transfer-Encoding: 8bit --- help/help/html/features/pymol.html | 5 +---- help/help/html/whatsNew.html | 19 ++++++++----------- 2 files changed, 9 insertions(+), 15 deletions(-) diff --git a/help/help/html/features/pymol.html b/help/help/html/features/pymol.html index 2c5c7ad..c6a2ae2 100644 --- a/help/help/html/features/pymol.html +++ b/help/help/html/features/pymol.html @@ -59,10 +59,7 @@ example project).
  • Pymol to Jalview communication does not support transfer of properties or highlighting sequence regions corresponding to - structure selections or mouse-overs in Pymol.
    • -
  • Jalview to Pymol communication currently doesn't highlight - the positions on structures corresponding to moused-overs - in Jalview.
    • + structure selections or mouse-overs in Pymol.

    Basic screen operations (see

    Support for viewing structures with ChimeraX and - Pymol
    Structures Preferences tab provides new options - allowing ChimeraX and Pymol to be used for visualising external 3D - structures. Jalview 2.11.2 has been tested with Pymol 2.5.0 - (community) and 2.5.2 (incentive). For ChimeraX, we recommend - using v1.3 or later. Jalview's 3D structure viewer system has been + Pymol
    Jalview's 3D structure viewer system has been re-architected to allow easier integration of external structure viewers, and takes advantage of the strucViz2 Chimera communications library developed by Scooter Morris (    doi:10.1093/bioinformatics/btm329). + The Structures Preferences tab provides new options + allowing ChimeraX and Pymol to be used for visualising external 3D + structures. Jalview 2.11.2 has been tested with Pymol 2.5.0 + (community) and 2.5.2 (incentive). For ChimeraX, we recommend + using v1.3 or later.

    For the full release notes, see the Jalview 2.11.1.4 + href="releases.html#Jalview.2.11.2.0">the Jalview 2.11.2.0 release notes.

    Known Issues

    -

    New known issues in this release affect recovery of - CDS/Protein relationships from project files, and interactive - selection of protein sequences from a tree built on linked - nucleotide sequences. We will provide patches for these issues as - soon as possible.

    +

    -- 1.7.10.2