From 649c47b17bfa0e31a3c773d54da4edbee60bfb8b Mon Sep 17 00:00:00 2001 From: "cmzmasek@gmail.com" Date: Fri, 28 Sep 2012 01:57:51 +0000 Subject: [PATCH] in progress --- forester/ruby/evoruby/exe/run_phylo_pipeline.rb | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/forester/ruby/evoruby/exe/run_phylo_pipeline.rb b/forester/ruby/evoruby/exe/run_phylo_pipeline.rb index e144552..045faaf 100755 --- a/forester/ruby/evoruby/exe/run_phylo_pipeline.rb +++ b/forester/ruby/evoruby/exe/run_phylo_pipeline.rb @@ -31,8 +31,8 @@ module Evoruby input = ARGV[ 0 ] hmm = ARGV[ 1 ] - length = ARGV[ 2 ] - e_value_exp = ARGV[ 3 ] + length = ARGV[ 2 ].to_i + e_value_exp = ARGV[ 3 ].to_i do_domain_combination_analysis = true if e_value_exp < 0 @@ -48,7 +48,7 @@ module Evoruby elsif input.downcase.end_with?( ".fsa" ) base_name = input[ 0 .. input.length - 5 ] else - base_name = input + base_name = input end if do_domain_combination_analysis -- 1.7.10.2