From 67dd34ce6c0b2e9954ac8277910f35674bcd3497 Mon Sep 17 00:00:00 2001
From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Mon, 25 Feb 2019 15:24:57 +0000
Subject: [PATCH] JAL-3032 JalviewJS2 converts url query parameters to
 'applet' args

---
 src/jalview/bin/JalviewJS2.java |   21 ++++++++++++---------
 1 file changed, 12 insertions(+), 9 deletions(-)

diff --git a/src/jalview/bin/JalviewJS2.java b/src/jalview/bin/JalviewJS2.java
index eff5334..0a02a8d 100644
--- a/src/jalview/bin/JalviewJS2.java
+++ b/src/jalview/bin/JalviewJS2.java
@@ -25,20 +25,23 @@ public class JalviewJS2
      *            "examples/exampleFeatures.txt"];
      */
 
-	  
-	    /**
-	     * @j2sNative
-	     * 
-	     *            thisApplet.__Info.args =
-	     *            ["open","examples/jaxbtest.jvx"];
-	     */
-
+    /**
+     * @j2sNative
+     * 
+     * 	hr = decodeURI(document.location.href);
+     *  pos = hr.indexOf("?");
+     *  // set space-delimited query parameters as arguments to Jalview main
+     *  if (pos > 0)
+     *  {
+     *     thisApplet.__Info.args = hr.substring(pos+1).split(" ");
+     *  }
+     */
   }
 
   public static void main(String[] args) throws Exception
   {
     Jalview.main(args);
-	showFocusTimer();
+	//showFocusTimer();
 }
 
 protected static int focusTime = 0;
-- 
1.7.10.2