From 685b0a8164c4cd8ba50abb4eb0ea55edf26705fe Mon Sep 17 00:00:00 2001
From: hansonr <hansonr@stolaf.edu>
Date: Wed, 27 Jun 2018 13:02:24 +0100
Subject: [PATCH] JAL-3026 FileParser for JFileChooser results as
 ByteArrayInputStream; does not imply text.

---
 src/jalview/io/FileParse.java |    5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/src/jalview/io/FileParse.java b/src/jalview/io/FileParse.java
index 7e1940f..bb03b35 100755
--- a/src/jalview/io/FileParse.java
+++ b/src/jalview/io/FileParse.java
@@ -27,6 +27,7 @@ import jalview.api.FeatureSettingsModelI;
 import jalview.util.MessageManager;
 
 import java.io.BufferedReader;
+import java.io.ByteArrayInputStream;
 import java.io.File;
 import java.io.FileInputStream;
 import java.io.FileReader;
@@ -348,7 +349,7 @@ public class FileParse
       {
         // this will be from JavaScript
         inFile = file;
-        dataIn = new BufferedReader(new StringReader(new String(bytes)));
+        dataIn = new BufferedReader(new java.io.InputStreamReader(new ByteArrayInputStream(bytes)));
         dataName = fileStr;
       }
       else if (checkFileSource(fileStr))
@@ -384,8 +385,8 @@ public class FileParse
        * 
        */
 
-      System.out.println(data);
       dataIn = Rdr.getBR(data);
+      
       dataName = fileStr;
 
     }
-- 
1.7.10.2