From 68afc8e1b0a462cc4e876e37f23a66adb20518d1 Mon Sep 17 00:00:00 2001
From: Ben Soares <bsoares@dundee.ac.uk>
Date: Fri, 8 Nov 2019 17:18:05 +0000
Subject: [PATCH] JAL-3210 PublishCoreTemplate task

---
 build.gradle      |   28 +++++++++++++++++++++++++++-
 gradle.properties |    1 +
 2 files changed, 28 insertions(+), 1 deletion(-)

diff --git a/build.gradle b/build.gradle
index fb24235..bbba335 100644
--- a/build.gradle
+++ b/build.gradle
@@ -2159,6 +2159,32 @@ task jalviewjsIDE_BuildAllCores {
 }
 
 
-task jalviewjsPublishCoreTemplate {
+task jalviewjsPublishCoreTemplate(type: Sync) {
+  dependsOn jalviewjsSitePath
   dependsOn jalviewjsBuildAllCores
+
+// clean this up
+  def inputFile = file("${jalviewDir}/${j2s_template_html}")
+  def outputDir = "${jalviewDir}/${jalviewjsTransferSiteCoreDir}"
+
+// clean this up
+  def jalviewTemplateName = "JalviewJS"
+  def jalviewCoreName = "_jalview"
+
+  from inputFile
+  into outputDir
+  def outputFiles = []
+  rename { filename ->
+    outputFiles += "${outputDir}/${filename}"
+    if (filename.equals(inputFile.getName())) {
+      return "${jalviewTemplateName}_${jalviewCoreName}.html"
+    }
+    return null
+  }
+  filter(ReplaceTokens, beginToken: '', endToken: '', tokens: ['NONE': jalviewCoreName])
+  preserve {
+    include "**"
+  }
+  outputs.files outputFiles
+  inputs.files inputFile
 }
diff --git a/gradle.properties b/gradle.properties
index 03ec720..710e942 100644
--- a/gradle.properties
+++ b/gradle.properties
@@ -190,6 +190,7 @@ j2s.excluded.paths = test;testng;util
 #a semicolon-separated list of package (foo.) or class (foo.bar) replacements to be made 
 j2s.class.replacements = org.apache.log4j.->jalview.javascript.log4j.
 j2s.template.html = utils/jalviewjs/template.html
+j2s_template_html = utils/jalviewjs/template.html
 #output file name for logging methods declared - delete the file to regenerate a listing 
 #j2s.prop.j2s.log.methods.declared=swingjs/methodsDeclared_csv
 #output file name for logging methods called - delete the file to regenerate a listing
-- 
1.7.10.2