From 68b1e563763e0c109687506953321fd36f464396 Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Sun, 19 Jun 2016 11:55:19 +0100 Subject: [PATCH] JAL-2110 distinct alignedcodonframe entries for tests --- test/jalview/structure/StructureSelectionManagerTest.java | 11 +++++++++++ 1 file changed, 11 insertions(+) diff --git a/test/jalview/structure/StructureSelectionManagerTest.java b/test/jalview/structure/StructureSelectionManagerTest.java index 999d158..d07f919 100644 --- a/test/jalview/structure/StructureSelectionManagerTest.java +++ b/test/jalview/structure/StructureSelectionManagerTest.java @@ -29,6 +29,7 @@ import jalview.datamodel.SequenceFeature; import jalview.datamodel.SequenceI; import jalview.io.FormatAdapter; import jalview.io.StructureFile; +import jalview.util.MapList; import java.util.ArrayList; import java.util.List; @@ -51,7 +52,11 @@ public class StructureSelectionManagerTest public void testRegisterMapping() { AlignedCodonFrame acf1 = new AlignedCodonFrame(); + acf1.addMap(new Sequence("s1", "ttt"), new Sequence("p1", "p"), + new MapList(new int[] { 1, 3 }, new int[] { 1, 1 }, 1, 1)); AlignedCodonFrame acf2 = new AlignedCodonFrame(); + acf2.addMap(new Sequence("s2", "ttt"), new Sequence("p2", "p"), + new MapList(new int[] { 1, 3 }, new int[] { 1, 1 }, 1, 1)); ssm.registerMapping(acf1); assertEquals(1, ssm.getSequenceMappings().size()); @@ -75,8 +80,14 @@ public class StructureSelectionManagerTest public void testRegisterMappings() { AlignedCodonFrame acf1 = new AlignedCodonFrame(); + acf1.addMap(new Sequence("s1", "ttt"), new Sequence("p1", "p"), + new MapList(new int[] { 1, 3 }, new int[] { 1, 1 }, 1, 1)); AlignedCodonFrame acf2 = new AlignedCodonFrame(); + acf2.addMap(new Sequence("s2", "ttt"), new Sequence("p2", "p"), + new MapList(new int[] { 1, 3 }, new int[] { 1, 1 }, 1, 1)); AlignedCodonFrame acf3 = new AlignedCodonFrame(); + acf3.addMap(new Sequence("s3", "ttt"), new Sequence("p3", "p"), + new MapList(new int[] { 1, 3 }, new int[] { 1, 1 }, 1, 1)); List set1 = new ArrayList(); set1.add(acf1); -- 1.7.10.2