From 69ec529c95b2446ce936575676ee7e432293b5f8 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Mon, 1 May 2006 13:22:22 +0000
Subject: [PATCH] If mac, use the fillRoundRect

---
 src/jalview/appletgui/AnnotationPanel.java |   33 +++++++++++++++++++++++++---
 1 file changed, 30 insertions(+), 3 deletions(-)

diff --git a/src/jalview/appletgui/AnnotationPanel.java b/src/jalview/appletgui/AnnotationPanel.java
index d9b8dd3..daa68d1 100755
--- a/src/jalview/appletgui/AnnotationPanel.java
+++ b/src/jalview/appletgui/AnnotationPanel.java
@@ -51,8 +51,13 @@ public class AnnotationPanel
 
   public static int GRAPH_HEIGHT = 40;
 
+  boolean MAC = false;
+
   public AnnotationPanel(AlignmentPanel ap)
   {
+    if (System.getProperty("os.name").startsWith("Mac"))
+      MAC = true;
+
     this.ap = ap;
     av = ap.av;
     this.setLayout(null);
@@ -391,11 +396,21 @@ public class AnnotationPanel
                       {
                       case 'H':
                         g.setColor(HELIX_COLOUR);
+                        if (MAC)
+                        {
+                          //Off by 1 offset when drawing rects and ovals
+                          //to offscreen image on the MAC
+                          g.fillRoundRect(lastSSX, y + 4 + iconOffset,
+                                          x - lastSSX, 7, 8, 8);
+                          break;
+                        }
+
                         int sCol = (lastSSX / av.charWidth) + startRes;
                         int x1 = lastSSX;
                         int x2 = x;
 
-                       if(row.annotations[sCol-1]==null ||
+                       if(sCol==0 ||
+                          row.annotations[sCol-1]==null ||
                           row.annotations[sCol-1].secondaryStructure!='H')
                        {
                          g.fillArc(lastSSX, y+4+iconOffset, av.charWidth, 8, 90,180) ;
@@ -459,12 +474,22 @@ public class AnnotationPanel
               {
               case 'H':
                 g.setColor(HELIX_COLOUR);
+                if (MAC)
+                {
+                  //Off by 1 offset when drawing rects and ovals
+                  //to offscreen image on the MAC
+                  g.fillRoundRect(lastSSX, y + 4 + iconOffset,
+                                  x - lastSSX, 7, 8, 8);
+                  break;
+                }
+
 
                 int sCol = (lastSSX / av.charWidth) + startRes;
                 int x1 = lastSSX;
                 int x2 = x;
 
-               if(row.annotations[sCol-1]==null ||
+               if(sCol==0 ||
+                  row.annotations[sCol-1]==null ||
                   row.annotations[sCol-1].secondaryStructure!='H')
                {
                  g.fillArc(lastSSX, y+4+iconOffset, av.charWidth, 8, 90,180) ;
@@ -577,7 +602,6 @@ public class AnnotationPanel
       return;
 
 
-    eRes = Math.min(eRes, aa.annotations.length);
 
     int x = 0;
 
@@ -585,6 +609,9 @@ public class AnnotationPanel
     if(eRes<av.endRes)
       eRes++;
 
+    eRes = Math.min(eRes, aa.annotations.length);
+
+
     if(sRes==0)
     {
       sRes++;
-- 
1.7.10.2