From 6a44f113099e7ee83deada4d8426cd98757c2425 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Fri, 2 Feb 2007 17:35:20 +0000
Subject: [PATCH] Dont add group if seqs not found

---
 src/jalview/io/AnnotationFile.java |    7 +++++--
 1 file changed, 5 insertions(+), 2 deletions(-)

diff --git a/src/jalview/io/AnnotationFile.java b/src/jalview/io/AnnotationFile.java
index 80d31fb..56040d9 100755
--- a/src/jalview/io/AnnotationFile.java
+++ b/src/jalview/io/AnnotationFile.java
@@ -588,8 +588,11 @@ public class AnnotationFile
       sg.setEndRes(   refSeq.findIndex( sg.getEndRes() +1) -1 );
     }
 
-    al.addGroup(sg);
-    annotationsHash.put(sg.getName(), sg);
+    if(sg.getSize()>0)
+    {
+      al.addGroup(sg);
+      annotationsHash.put(sg.getName(), sg);
+    }
   }
 
   void addProperties(AlignmentI al, StringTokenizer st)
-- 
1.7.10.2