From 6cbe1876d4a5fdd7d5b73e11bf2468fe4e75ce99 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Fri, 8 Apr 2005 15:01:16 +0000
Subject: [PATCH] reads fasta files from uniprot web page

---
 src/jalview/io/FastaFile.java |    6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/src/jalview/io/FastaFile.java b/src/jalview/io/FastaFile.java
index 586ede6..4c1ba9e 100755
--- a/src/jalview/io/FastaFile.java
+++ b/src/jalview/io/FastaFile.java
@@ -54,6 +54,12 @@ public class FastaFile extends AlignFile {
 
 	    id = str.nextToken();
 	    id = id.substring(1);
+           if(id.indexOf("UniProt/Swiss-Prot")>-1)
+            {
+              id = id.substring(id.indexOf("UniProt/Swiss-Prot|") + 19);
+              if(id.indexOf("|")>-1)
+                id = id.substring(id.indexOf("|") + 1);
+            }
 
 	    if (id.indexOf("/") > 0 ) {
 
-- 
1.7.10.2