From 6df796e6c9f42b5986443fd517765d1f84973f4c Mon Sep 17 00:00:00 2001
From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Sun, 3 Jul 2011 12:56:11 +0100
Subject: [PATCH] javadoc built under dist directory for all Jalview source
 (JAL-858)

---
 build.xml |   11 ++++++++++-
 1 file changed, 10 insertions(+), 1 deletion(-)

diff --git a/build.xml b/build.xml
index 5b1066f..faa953d 100755
--- a/build.xml
+++ b/build.xml
@@ -151,6 +151,8 @@
 			</fileset>
 			<pathelement location="appletlib/${jmolJar}" />
 		</path>
+    <!-- default location for outputting javadoc -->
+    <property name="javadocDir" value="${packageDir}/javadoc"/>
 	</target>
 
 
@@ -171,7 +173,7 @@
 
 	<target name="clean" depends="init">
 		<!-- not efficient yet. -->
-		<delete dir="${outputDir}" />
+		<delete dir="${outputDir}" includes="*,**/*"/>
 	</target>
 
 	<target name="distclean" depends="init, clean">
@@ -581,4 +583,11 @@
 	  </copy>
 	  		
 	</target>
+	<target name="sourcedoc" description="Create jalview source documentation pages" depends="init">
+	 <javadoc destdir="${javadocDir}">
+	 	<packageset dir="${sourceDir}" includes="jalview/*,MCView/*">
+	 	</packageset>
+	 	</javadoc>
+	</target>
+	
 </project>
-- 
1.7.10.2