From 6e52c3f5f6679026d2adccab3dc15e90faebf8f7 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Wed, 15 Nov 2006 16:43:21 +0000
Subject: [PATCH] dont adjust aligments if they're the same size

---
 src/jalview/appletgui/PaintRefresher.java |    4 ++++
 src/jalview/gui/PaintRefresher.java       |    4 ++++
 2 files changed, 8 insertions(+)

diff --git a/src/jalview/appletgui/PaintRefresher.java b/src/jalview/appletgui/PaintRefresher.java
index 322466b..1195210 100755
--- a/src/jalview/appletgui/PaintRefresher.java
+++ b/src/jalview/appletgui/PaintRefresher.java
@@ -147,6 +147,10 @@ public class PaintRefresher
         a2 = comp.getSequencesArray();
 
       int i, iSize=a1.length, j, jSize=a2.length;
+
+      if(iSize == jSize)
+        return;
+
       boolean exists = false;
       for(i=0; i<iSize; i++)
       {
diff --git a/src/jalview/gui/PaintRefresher.java b/src/jalview/gui/PaintRefresher.java
index 1def794..de1d5d8 100755
--- a/src/jalview/gui/PaintRefresher.java
+++ b/src/jalview/gui/PaintRefresher.java
@@ -147,6 +147,10 @@ public class PaintRefresher
         a2 = comp.getSequencesArray();
 
       int i, iSize=a1.length, j, jSize=a2.length;
+
+      if(iSize == jSize)
+        return;
+
       boolean exists = false;
       for(i=0; i<iSize; i++)
       {
-- 
1.7.10.2