From 705db65374af9295e31e695ae0643b17423fa382 Mon Sep 17 00:00:00 2001
From: tcofoegbu <tcnofoegbu@dundee.ac.uk>
Date: Mon, 15 May 2017 15:52:56 +0100
Subject: [PATCH] JAL-2533 improvement to prune off file extension when
 imported seqs are named with the data file

---
 src/jalview/io/StructureFile.java |    3 +++
 1 file changed, 3 insertions(+)

diff --git a/src/jalview/io/StructureFile.java b/src/jalview/io/StructureFile.java
index 7fe17c8..5ff1a02 100644
--- a/src/jalview/io/StructureFile.java
+++ b/src/jalview/io/StructureFile.java
@@ -415,6 +415,9 @@ public abstract class StructureFile extends AlignFile
     {
       dataName = dataName.substring(p + 1);
     }
+    if(dataName.indexOf(".") > -1){
+      dataName = dataName.substring(0, dataName.lastIndexOf("."));
+    }
     return dataName;
   }
 
-- 
1.7.10.2