From 709f823ab0a80763a9cc7093f0aebb414b70f1af Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Fri, 8 Apr 2005 15:42:32 +0000
Subject: [PATCH] Printing wrapped alignment corrected

---
 src/jalview/gui/AlignmentPanel.java |   10 ++++++----
 1 file changed, 6 insertions(+), 4 deletions(-)

diff --git a/src/jalview/gui/AlignmentPanel.java b/src/jalview/gui/AlignmentPanel.java
index 73cee2d..a6ebc6d 100755
--- a/src/jalview/gui/AlignmentPanel.java
+++ b/src/jalview/gui/AlignmentPanel.java
@@ -537,11 +537,13 @@ public class AlignmentPanel extends GAlignmentPanel implements AdjustmentListene
     // Draw the ids
     pg.setClip(0,0,pwidth, noChunksOnPage*chunkHeight);
 
-    int row = pi*noChunksOnPage;
     pg.setColor(Color.black);
-    for(int ypos=2*av.charHeight;
-        ypos <= pheight && row*chunkWidth<da.getWidth();
-        ypos += chunkHeight, row++ )
+
+    int rowSize =  av.getEndRes() - av.getStartRes();
+    // Draw the rest of the panels
+
+    for(int ypos=2*av.charHeight, row=av.getEndRes(); row<av.alignment.getWidth();
+        ypos += av.chunkHeight, row+=rowSize )
     {
       for (int i = 0; i < endy; i++)
       {
-- 
1.7.10.2