From 764f0d166bb7651490cbd5181063b6dd00042b07 Mon Sep 17 00:00:00 2001
From: Sasha Sherstnev <a.sherstnev@dundee.ac.uk>
Date: Thu, 24 Oct 2013 18:27:58 +0100
Subject: [PATCH] Add some necessary files

---
 META-INF/MANIFEST.MF   |    3 +++
 conf/Engine.properties |   38 ++++++++++++++++++++++++++++++++++++++
 conf/GA.properties     |   19 +++++++++++++++++++
 3 files changed, 60 insertions(+)
 create mode 100644 META-INF/MANIFEST.MF
 create mode 100644 conf/Engine.properties
 create mode 100644 conf/GA.properties

diff --git a/META-INF/MANIFEST.MF b/META-INF/MANIFEST.MF
new file mode 100644
index 0000000..5e94951
--- /dev/null
+++ b/META-INF/MANIFEST.MF
@@ -0,0 +1,3 @@
+Manifest-Version: 1.0
+Class-Path: 
+
diff --git a/conf/Engine.properties b/conf/Engine.properties
new file mode 100644
index 0000000..dd2a0db
--- /dev/null
+++ b/conf/Engine.properties
@@ -0,0 +1,38 @@
+#################################################################################
+# enable or disable engine true | false
+# OPTIONAL defaults to true
+engine.local.enable=true 
+
+#################################################################################
+# Directory to use for temporary files storage
+# OPTIONAL defaults to java temporary directory 
+# Relative path within the project will be converted in absolute at runtime
+#local.tmp.directory=/cluster/gjb_lab/fc/www-jws2/jaba/local_jobsout 
+local.tmp.directory=jobsout 
+
+#################################################################################
+# Number of threads for tasks execution (valid values between 1 and 2x cpu. 
+# Where x is a number of cores available in the system)
+# OPTIONAL defaults to the number of cores for core number <=4 and 
+# number of cores-1 for greater core numbers
+engine.local.thread.number=2
+
+#################################################################################
+# Enable/disable cluster statistics collector
+local.stat.collector.enable=true
+# Frequency of statistics collecting (in minutes)
+# normal rate: once a date = 24 * 60 = 1440
+local.stat.collector.update.frequency=1
+
+# Maximum amount of time the job is considered running in hours
+# Optional defaults to 24 hours
+local.stat.maxruntime=6
+
+#################################################################################
+# Maximum amount of time the job directory is living (in hours), 
+# -1 means the directories are never deleted
+# Defaults is one week, i.e. 168 hours
+local.jobdir.maxlifespan=168
+# Frequency of cleaning job directory (in minutes)
+# normal rate: once a date = 24 * 60 = 1440
+local.jobdir.cleaning.frequency=1
diff --git a/conf/GA.properties b/conf/GA.properties
new file mode 100644
index 0000000..904765c
--- /dev/null
+++ b/conf/GA.properties
@@ -0,0 +1,19 @@
+# This file contains settings for Google Analytics (GA) Statistics Engine.
+# Feel free to remove/delete this file if you do not want us to see that you
+# use ProteoCache. 
+# However, we would appreciate it greatly if you could leave it on. ProteoCache 
+# usage statistics are collected for funding and reporting purposes, and no 
+# private information is collected. The data sent by ProteoCache is as follows: 
+# 1) The IP address of the ProteoCache server machine.
+# 2) The name of the web service that was called.
+# 3) A few details of the system such as java version, user language, 
+#    color depth, screen, resolution and character encoding.
+
+# All calls to GA are completed asynchronously and create very little
+# overhead. Thus they do not influence the server response time or performance.
+
+# Values yes or true = enable GA, any other value will disable it
+enable.ga=no
+# If set to yes replaces your server name/IP address with 127.0.0.1
+anonymize.ip=no
+
-- 
1.7.10.2