From 77089d22860b84145b18f084efe95f6efa484674 Mon Sep 17 00:00:00 2001
From: jprocter <Jim Procter>
Date: Tue, 4 Nov 2008 13:29:51 +0000
Subject: [PATCH] implemented embl validation properly

---
 src/jalview/ws/dbsources/EmblCdsSouce.java |    5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/src/jalview/ws/dbsources/EmblCdsSouce.java b/src/jalview/ws/dbsources/EmblCdsSouce.java
index 1ac5c76..b3242ad 100644
--- a/src/jalview/ws/dbsources/EmblCdsSouce.java
+++ b/src/jalview/ws/dbsources/EmblCdsSouce.java
@@ -68,8 +68,9 @@ public class EmblCdsSouce extends EmblXmlSource implements DbSourceProxy
 
   public boolean isValidReference(String accession)
   {
-    // TODO Auto-generated method stub
-    return true;
+    // most embl CDS refs look like ..
+    // TODO: improve EMBLCDS regex
+    return (accession==null || accession.length()<2) ? false : new com.stevesoft.pat.Regex("^[A-Z]+[0-9]+").search(accession);
   }
 
   /**
-- 
1.7.10.2