From 77e9dc41516acc93470931bcc5f344c67e819e70 Mon Sep 17 00:00:00 2001 From: jprocter Date: Fri, 22 Feb 2008 16:28:47 +0000 Subject: [PATCH] possible fix for stockhom ss-annotation re-creation after it is saved to Jalview project --- src/jalview/datamodel/AlignmentAnnotation.java | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/src/jalview/datamodel/AlignmentAnnotation.java b/src/jalview/datamodel/AlignmentAnnotation.java index 8cfe728..f68786b 100755 --- a/src/jalview/datamodel/AlignmentAnnotation.java +++ b/src/jalview/datamodel/AlignmentAnnotation.java @@ -154,8 +154,11 @@ Loading... { continue; } - + if (annotations[i].displayCharacter.length() == 1 + // Uncomment to only catch case where displayCharacter==secondary Structure + // to correctly redisplay SS annotation imported from Stockholm, exported to JalviewXML and read back in again. + // && annotations[i].displayCharacter.charAt(0)==annotations[i].secondaryStructure && !annotations[i].displayCharacter.equals("H") && !annotations[i].displayCharacter.equals("E") && !annotations[i].displayCharacter.equals("-") -- 1.7.10.2