From 7a33703b08606394844a7cc796ca1ffe83e3d2d1 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Fri, 15 Apr 2005 14:59:46 +0000
Subject: [PATCH] pid and conservation slider moved to sliderPanel

---
 src/jalview/gui/Desktop.java |   87 ------------------------------------------
 1 file changed, 87 deletions(-)

diff --git a/src/jalview/gui/Desktop.java b/src/jalview/gui/Desktop.java
index 331f882..5076243 100755
--- a/src/jalview/gui/Desktop.java
+++ b/src/jalview/gui/Desktop.java
@@ -327,91 +327,4 @@ this.setDropTarget(new java.awt.dnd.DropTarget(desktop, this));
      ex.printStackTrace();
    }
  }
-
- static JInternalFrame conservationSlider;
- static JInternalFrame PIDSlider;
- public static int setConservationSliderSource(AlignmentPanel ap, ColourSchemeI cs, String source)
- {
-   SliderPanel sp = null;
-   ConservationColourScheme ccs = (ConservationColourScheme)cs;
-   int value = ccs.inc;
-
-   if(conservationSlider == null)
-   {
-     sp = new SliderPanel(ap, value, true, cs);
-     conservationSlider = new JInternalFrame();
-     conservationSlider.setContentPane(sp);
-     addInternalFrame(conservationSlider, "Conservation Colour Increment  ("+source+")", 420, 90, false);
-     conservationSlider.addInternalFrameListener(new javax.swing.event.InternalFrameAdapter()
-                  {
-                    public void internalFrameClosed(javax.swing.event.InternalFrameEvent e)
-                    {
-                      conservationSlider = null;
-                    }
-                  });
-      conservationSlider.setLayer(JLayeredPane.PALETTE_LAYER);
-   }
-   else
-   {
-
-       conservationSlider.setTitle("Conservation Colour Increment  ("+source+")");
-       sp = (SliderPanel)conservationSlider.getContentPane();
-       sp.cs = cs;
-       sp.setValue(value);
-   }
-
-   if(ap.av.alignment.getGroups()!=null)
-     sp.setAllGroupsCheckEnabled( true );
-   else
-     sp.setAllGroupsCheckEnabled( false);
-
-   return sp.getValue();
-
- }
-
- public static void hideConservationSlider()
- {
-  try{
-    conservationSlider.setClosed(true);
-    conservationSlider = null;
-  }catch(Exception ex){}
-}
-
-
- public static void hidePIDSlider()
- {
-   try{
-     PIDSlider.setClosed(true);
-     PIDSlider = null;
-   }catch(Exception ex){}
- }
-
- public static int setPIDSliderSource(AlignmentPanel ap, ColourSchemeI cs, String source)
- {
-   SliderPanel pid = null;
-   if(PIDSlider == null)
-   {
-     pid = new SliderPanel(ap, 50, false, cs);
-     PIDSlider = new JInternalFrame();
-     PIDSlider.setContentPane(pid);
-     addInternalFrame(PIDSlider, "Percentage Identity Threshold ("+source+")", 420, 90, false);
-     PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER);
-   }
-   else
-   {
-       PIDSlider.setTitle("Percentage Identity Threshold ("+source+")");
-       pid = (SliderPanel)PIDSlider.getContentPane();
-       pid.cs = cs;
-   }
-
-   if (ap.av.alignment.getGroups() != null)
-     pid.setAllGroupsCheckEnabled(true);
-   else
-     pid.setAllGroupsCheckEnabled(false);
-
-
-   return pid.getValue();
-
- }
-
 }
-- 
1.7.10.2