From 7d736363504249a051fa237946a953595861b899 Mon Sep 17 00:00:00 2001 From: Ben Soares Date: Fri, 8 Nov 2019 16:45:20 +0000 Subject: [PATCH] JAL-3210 BuildAllCores dependencies carefully implemented so Eclipse does not call headless task --- build.gradle | 302 +++++++---- gradle.properties | 4 + utils/jalviewjs/_j2sclasslist.txt | 885 +++++++++++++++++++++++++++----- utils/jalviewjs/_j2sclasslist_jmol.txt | 233 +++++++++ 4 files changed, 1191 insertions(+), 233 deletions(-) create mode 100644 utils/jalviewjs/_j2sclasslist_jmol.txt diff --git a/build.gradle b/build.gradle index 3e2a029..a333e7d 100644 --- a/build.gradle +++ b/build.gradle @@ -73,6 +73,7 @@ def libDistDir def compile_source_compatibility def compile_target_compatibility + ext { getdownWebsiteDir = "${jalviewDir}/${getdown_website_dir}/${JAVA_VERSION}" getdownDir = "" @@ -246,6 +247,7 @@ if (JAVA_VERSION.equals("1.8")) { throw new GradleException("JAVA_VERSION=${JAVA_VERSION} not currently supported by Jalview") } + sourceSets { main { @@ -310,6 +312,7 @@ sourceSets { } } + // clover bits dependencies { if (use_clover) { @@ -318,11 +321,13 @@ dependencies { } } + configurations { cloverRuntime cloverRuntime.extendsFrom cloverCompile } + eclipse { project { name = eclipse_project_name @@ -395,12 +400,13 @@ eclipse { } //fileTree(dir: "$jalviewDir/$utilsDir", include: ["test*/*.jar"]).each { - sourceSets.test.compileClasspath.findAll { it.name.endsWith(".jar") }.each { + sourceSets.test.compileClasspath.findAll { it.name.endsWith(".jar") }.any { //no longer want to add outputDir as eclipse is using its own output dir in bin/main if (it.isDirectory() || ! it.exists()) { // don't add dirs to classpath - return false // groovy "break" in .each closure + return false // groovy "continue" in .any closure } + def itPath = it.toString() if (itPath.startsWith("${jalviewDirAbsolutePath}/")) { itPath = itPath.substring(jalviewDirAbsolutePath.length()+1) @@ -451,6 +457,7 @@ eclipse { } + task cloverInstr() { // only instrument source, we build test classes as normal inputs.files files (sourceSets.main.allJava) // , fileTree(dir:"$jalviewDir/$testSourceDir", include: ["**/*.java"])) @@ -490,7 +497,6 @@ task cloverReport { com.atlassian.clover.reporters.xml.XMLReporter.runReport(args) } } - // end clover bits @@ -505,6 +511,7 @@ compileJava { } + compileTestJava { if (use_clover) { dependsOn compileCloverJava @@ -532,12 +539,14 @@ compileCloverJava { classpath += configurations.cloverRuntime } + clean { doFirst { delete sourceSets.main.java.outputDir } } + cleanTest { doFirst { delete sourceSets.test.java.outputDir @@ -545,12 +554,14 @@ cleanTest { } } + // format is a string like date.format("dd MMMM yyyy") def getDate(format) { def date = new Date() return date.format(format) } + task setGitVals { def hashStdOut = new ByteArrayOutputStream() exec { @@ -572,6 +583,7 @@ task setGitVals { outputs.upToDateWhen { false } } + task createBuildProperties(type: WriteProperties) { dependsOn setGitVals inputs.dir("${jalviewDir}/${sourceDir}") @@ -587,6 +599,7 @@ task createBuildProperties(type: WriteProperties) { outputs.file(outputFile) } + def buildingHTML = "${jalviewDir}/${docDir}/building.html" task cleanBuildingHTML(type: Delete) { doFirst { @@ -594,6 +607,7 @@ task cleanBuildingHTML(type: Delete) { } } + task convertBuildingMD(type: Exec) { dependsOn cleanBuildingHTML def buildingMD = "${jalviewDir}/${docDir}/building.md" @@ -628,12 +642,14 @@ task convertBuildingMD(type: Exec) { outputs.file(buildingHTML) } + clean { doFirst { delete buildingHTML } } + task syncDocs(type: Sync) { dependsOn convertBuildingMD def syncDir = "${classes}/${docDir}" @@ -642,8 +658,8 @@ task syncDocs(type: Sync) { } -def helpFile = "${classes}/${helpDir}/help.jhm" +def helpFile = "${classes}/${helpDir}/help.jhm" task copyHelp(type: Copy) { def inputDir = "${jalviewDir}/${helpParentDir}/${helpDir}" def outputDir = "${classes}/${helpDir}" @@ -665,12 +681,14 @@ task copyHelp(type: Copy) { outputs.dir(outputDir) } + task syncLib(type: Sync) { def syncDir = "${classes}/${libDistDir}" from fileTree("${jalviewDir}/${libDistDir}") into syncDir } + task syncResources(type: Sync) { from "${jalviewDir}/${resourceDir}" include "**/*.*" @@ -680,6 +698,7 @@ task syncResources(type: Sync) { } } + task prepare { dependsOn syncResources dependsOn syncDocs @@ -713,6 +732,7 @@ test { } + task buildIndices(type: JavaExec) { dependsOn copyHelp classpath = sourceSets.main.compileClasspath @@ -732,6 +752,7 @@ task buildIndices(type: JavaExec) { outputs.file("${workingDir}/JavaHelpSearch/TMAP") } + task compileLinkCheck(type: JavaCompile) { options.fork = true classpath = files("${jalviewDir}/${utilsDir}") @@ -744,6 +765,7 @@ task compileLinkCheck(type: JavaCompile) { outputs.file("${jalviewDir}/${utilsDir}/BufferedLineReader.class") } + task linkCheck(type: JavaExec) { dependsOn prepare, compileLinkCheck @@ -804,11 +826,13 @@ jar { outputs.file("${jalviewDir}/${packageDir}/${archiveName}") } + task copyJars(type: Copy) { from fileTree(dir: "${classes}", include: "**/*.jar").files into "${jalviewDir}/${packageDir}" } + // doing a Sync instead of Copy as Copy doesn't deal with "outputs" very well task syncJars(type: Sync) { from fileTree(dir: "${jalviewDir}/${libDistDir}", include: "**/*.jar").files @@ -818,6 +842,7 @@ task syncJars(type: Sync) { } } + task makeDist { group = "build" description = "Put all required libraries in dist" @@ -830,6 +855,7 @@ task makeDist { outputs.dir("${jalviewDir}/${packageDir}") } + task cleanDist { dependsOn cleanPackageDir dependsOn cleanTest @@ -853,6 +879,7 @@ shadowJar { minimize() } + task getdownWebsite() { group = "distribution" description = "Create the getdown minimal app folder, and website folder for this version of jalview. Website folder also used for offline app installer" @@ -1033,6 +1060,7 @@ task getdownWebsite() { outputs.dir(project.ext.getdownFilesDir) } + task getdownDigest(type: JavaExec) { group = "distribution" description = "Digest the getdown website folder" @@ -1046,6 +1074,7 @@ task getdownDigest(type: JavaExec) { outputs.file("${project.ext.getdownWebsiteDir}/digest2.txt") } + task getdown() { group = "distribution" description = "Create the minimal and full getdown app folder for installers and website and create digest file" @@ -1068,6 +1097,7 @@ task getdown() { } } + clean { doFirst { delete project.ext.getdownWebsiteDir @@ -1075,6 +1105,7 @@ clean { } } + install4j { def install4jHomeDir = "/opt/install4j" def hostname = "hostname".execute().text.trim() @@ -1095,6 +1126,7 @@ install4j { } } + def install4jConf def macosJavaVMDir def macosJavaVMTgz @@ -1163,6 +1195,7 @@ task copyInstall4jTemplate(type: Copy) { } } + task installers(type: com.install4j.gradle.Install4jTask) { group = "distribution" description = "Create the install4j installers" @@ -1188,12 +1221,14 @@ task installers(type: com.install4j.gradle.Install4jTask) { outputs.dir("${jalviewDir}/${install4jBuildDir}/${JAVA_VERSION}") } + clean { doFirst { delete install4jConf } } + task sourceDist (type: Tar) { def VERSION_UNDERSCORES = JALVIEW_VERSION.replaceAll("\\.", "_") @@ -1264,6 +1299,7 @@ task sourceDist (type: Tar) { // } } + task helppages { dependsOn copyHelp dependsOn pubhtmlhelp @@ -1272,10 +1308,12 @@ task helppages { outputs.dir("${helpOutputDir}") } + def jalviewjsBuildDir def jalviewjsSiteDir def jalviewjsTransferSiteJsDir def jalviewjsTransferSiteLibDir +def jalviewjsTransferSiteSwingJsDir def jalviewjsTransferSiteCoreDir task jalviewjsSitePath { def relativeBuildDir = file(jalviewDirAbsolutePath).toPath().relativize(buildDir.toPath()) @@ -1283,9 +1321,11 @@ task jalviewjsSitePath { jalviewjsSiteDir = "${jalviewjsBuildDir}/${jalviewjs_site_dir}" jalviewjsTransferSiteJsDir = "${jalviewjsBuildDir}/tmp/${jalviewjs_site_dir}_js" jalviewjsTransferSiteLibDir = "${jalviewjsBuildDir}/tmp/${jalviewjs_site_dir}_lib" + jalviewjsTransferSiteSwingJsDir = "${jalviewjsBuildDir}/tmp/${jalviewjs_site_dir}_swingjs" jalviewjsTransferSiteCoreDir = "${jalviewjsBuildDir}/tmp/${jalviewjs_site_dir}_core" } + def eclipseWorkspace task jalviewjsSetEclipseWorkspace { def propKey = "jalviewjs_eclipse_workspace" @@ -1387,12 +1427,14 @@ task jalviewjsEclipsePaths { } } + task eclipseSetup { dependsOn eclipseProject dependsOn eclipseClasspath dependsOn eclipseJdt } + // this version (type: Copy) will delete anything in the eclipse dropins folder that isn't in fromDropinsDir task jalviewjsEclipseCopyDropins(type: Copy) { dependsOn jalviewjsEclipsePaths @@ -1405,6 +1447,7 @@ task jalviewjsEclipseCopyDropins(type: Copy) { into outputDir } + // this eclipse -clean doesn't actually work task jalviewjsCleanEclipse(type: Exec) { dependsOn eclipseSetup @@ -1424,16 +1467,33 @@ y def inputByteStream = new ByteArrayInputStream(inputString.getBytes()) standardInput = inputByteStream } + /* not really working yet jalviewjsEclipseCopyDropins.finalizedBy jalviewjsCleanEclipse */ -def jalviewjsTransferSiteUnzipDir + +task jalviewjsTransferUnzipSwingJs { + dependsOn jalviewjsSitePath + + def file_zip = "${jalviewDir}/${jalviewjs_swingjs_zip}" + + doLast { + copy { + from zipTree(file_zip) + into "${jalviewDir}/${jalviewjsTransferSiteSwingJsDir}" + } + } + + inputs.file file_zip + outputs.dir "${jalviewDir}/${jalviewjsTransferSiteSwingJsDir}" +} + + task jalviewjsTransferUnzipLib { dependsOn jalviewjsSitePath def zipFiles = fileTree(dir: "${jalviewDir}/${jalviewjs_libjs_dir}", include: "*.zip") - zipFiles += "${jalviewDir}/${jalviewjs_swingjs_zip}" doLast { zipFiles.each { file_zip -> @@ -1448,6 +1508,13 @@ task jalviewjsTransferUnzipLib { outputs.dir "${jalviewDir}/${jalviewjsTransferSiteLibDir}" } + +task jalviewjsTransferUnzipAllLibs { + dependsOn jalviewjsTransferUnzipSwingJs + dependsOn jalviewjsTransferUnzipLib +} + + task jalviewjsCreateJ2sSettings(type: WriteProperties) { group "JalviewJS" description "Create the .j2s file from the j2s.* properties" @@ -1476,16 +1543,19 @@ task jalviewjsCreateJ2sSettings(type: WriteProperties) { outputs.file(outputFile) } + task jalviewjsEclipseSetup { dependsOn jalviewjsEclipseCopyDropins dependsOn jalviewjsSetEclipseWorkspace dependsOn jalviewjsCreateJ2sSettings } -task jalviewjsSyncLib (type: Sync) { + +task jalviewjsSyncAllLibs (type: Sync) { dependsOn jalviewjsSitePath - dependsOn jalviewjsTransferUnzipLib + dependsOn jalviewjsTransferUnzipAllLibs def inputFiles = fileTree(dir: "${jalviewDir}/${jalviewjsTransferSiteLibDir}") + inputFiles += fileTree(dir: "${jalviewDir}/${jalviewjsTransferSiteSwingJsDir}") def outputDir = "${jalviewDir}/${jalviewjsSiteDir}" from inputFiles @@ -1502,25 +1572,6 @@ task jalviewjsSyncLib (type: Sync) { inputs.files inputFiles } -task jalviewjsSyncCore (type: Sync) { - dependsOn jalviewjsSitePath - dependsOn "jalviewjsBuildAllCores" - def inputFiles = fileTree(dir: "${jalviewDir}/${jalviewjsTransferSiteCoreDir}") - def outputDir = "${jalviewDir}/${jalviewjsSiteDir}" - - from inputFiles - into outputDir - def outputFiles = [] - rename { filename -> - outputFiles += "${outputDir}/${filename}" - null - } - preserve { - include "**" - } - outputs.files outputFiles - inputs.files inputFiles -} task jalviewjsSyncResources (type: Sync) { dependsOn jalviewjsSitePath @@ -1541,6 +1592,7 @@ task jalviewjsSyncResources (type: Sync) { inputs.files inputFiles } + task jalviewjsSyncSiteResources (type: Sync) { dependsOn jalviewjsSitePath def inputFiles = fileTree(dir: "${jalviewDir}/${jalviewjs_site_resource_dir}") @@ -1560,6 +1612,7 @@ task jalviewjsSyncSiteResources (type: Sync) { inputs.files inputFiles } + task jalviewjsSyncBuildProperties (type: Sync) { dependsOn jalviewjsSitePath dependsOn createBuildProperties @@ -1580,6 +1633,7 @@ task jalviewjsSyncBuildProperties (type: Sync) { inputs.files inputFiles } + task jalviewjsProjectImport(type: Exec) { dependsOn eclipseSetup dependsOn jalviewjsEclipsePaths @@ -1600,6 +1654,7 @@ task jalviewjsProjectImport(type: Exec) { } } + task jalviewjsTranspile(type: Exec) { dependsOn jalviewjsEclipseSetup dependsOn jalviewjsProjectImport @@ -1669,6 +1724,35 @@ DEBUG: ${eclipseDebug} outputs.upToDateWhen( { file("${jalviewDir}/${jalviewjsTransferSiteJsDir}${jalviewjs_server_resource}").exists() } ) } + +task jalviewjsNoTranspileSyncCore (type: Sync) { + dependsOn jalviewjsSitePath + dependsOn "jalviewjsNoTranspileBuildAllCores" + def inputFiles = fileTree(dir: "${jalviewDir}/${jalviewjsTransferSiteCoreDir}") + def outputDir = "${jalviewDir}/${jalviewjsSiteDir}" + + from inputFiles + into outputDir + def outputFiles = [] + rename { filename -> + outputFiles += "${outputDir}/${filename}" + null + } + preserve { + include "**" + } + outputs.files outputFiles + inputs.files inputFiles +} + + +task jalviewjsSyncCore (type: Sync) { + dependsOn jalviewjsTranspile + dependsOn jalviewjsNoTranspileSyncCore + dependsOn "jalviewjsBuildAllCores" +} + + // this Copy version of TransferSiteJs will delete anything else in the target dir task jalviewjsCopyTransferSiteJs(type: Copy) { dependsOn jalviewjsTranspile @@ -1676,8 +1760,9 @@ task jalviewjsCopyTransferSiteJs(type: Copy) { into "${jalviewDir}/${jalviewjsSiteDir}" } + // this Sync version of TransferSite is used by buildship to keep the website automatically up to date when a file changes -task jalviewjsSyncTransferSiteJs(type: Sync) { +task jalviewjsNoTranspileSyncTransferSiteJs(type: Sync) { from "${jalviewDir}/${jalviewjsTransferSiteJsDir}" include "**/*.*" into "${jalviewDir}/${jalviewjsSiteDir}" @@ -1686,26 +1771,37 @@ task jalviewjsSyncTransferSiteJs(type: Sync) { } } -jalviewjsSyncLib.mustRunAfter jalviewjsCopyTransferSiteJs +jalviewjsSyncAllLibs.mustRunAfter jalviewjsCopyTransferSiteJs jalviewjsSyncResources.mustRunAfter jalviewjsCopyTransferSiteJs jalviewjsSyncSiteResources.mustRunAfter jalviewjsCopyTransferSiteJs jalviewjsSyncBuildProperties.mustRunAfter jalviewjsCopyTransferSiteJs -jalviewjsSyncLib.mustRunAfter jalviewjsSyncTransferSiteJs -jalviewjsSyncResources.mustRunAfter jalviewjsSyncTransferSiteJs -jalviewjsSyncSiteResources.mustRunAfter jalviewjsSyncTransferSiteJs -jalviewjsSyncBuildProperties.mustRunAfter jalviewjsSyncTransferSiteJs +jalviewjsSyncAllLibs.mustRunAfter jalviewjsNoTranspileSyncTransferSiteJs +jalviewjsSyncResources.mustRunAfter jalviewjsNoTranspileSyncTransferSiteJs +jalviewjsSyncSiteResources.mustRunAfter jalviewjsNoTranspileSyncTransferSiteJs +jalviewjsSyncBuildProperties.mustRunAfter jalviewjsNoTranspileSyncTransferSiteJs + + +task jalviewjsNoTranspilePrepareSite { + dependsOn jalviewjsSyncAllLibs + dependsOn jalviewjsSyncResources + dependsOn jalviewjsSyncSiteResources + dependsOn jalviewjsSyncBuildProperties + dependsOn jalviewjsNoTranspileSyncCore +} + task jalviewjsPrepareSite { group "JalviewJS" description "Prepares the website folder including unzipping files and copying resources" - dependsOn jalviewjsSyncLib + dependsOn jalviewjsSyncAllLibs dependsOn jalviewjsSyncResources dependsOn jalviewjsSyncSiteResources dependsOn jalviewjsSyncBuildProperties dependsOn jalviewjsSyncCore } + task jalviewjsBuildSite { group "JalviewJS" description "Builds the whole website including transpiled code" @@ -1713,15 +1809,18 @@ task jalviewjsBuildSite { dependsOn jalviewjsPrepareSite } + task cleanJalviewjsSite { doFirst { delete "${jalviewDir}/${jalviewjsTransferSiteJsDir}" delete "${jalviewDir}/${jalviewjsTransferSiteLibDir}" + delete "${jalviewDir}/${jalviewjsTransferSiteSwingJsDir}" delete "${jalviewDir}/${jalviewjsTransferSiteCoreDir}" delete "${jalviewDir}/${jalviewjsSiteDir}" } } + task jalviewjsSiteTar(type: Tar) { group "JalviewJS" description "Creates a tar.gz file for the website" @@ -1741,6 +1840,7 @@ task jalviewjsSiteTar(type: Tar) { inputs.dir("${jalviewDir}/${jalviewjsSiteDir}") } + task jalviewjsServer { group "JalviewJS" def filename = "jalviewjsTest.html" @@ -1780,6 +1880,7 @@ task jalviewjsServer { outputs.upToDateWhen({false}) } + task cleanJalviewjsAll { group "JalviewJS" description "Delete all configuration and build artifacts to do with JalviewJS build" @@ -1798,6 +1899,7 @@ task cleanJalviewjsAll { outputs.upToDateWhen( { false } ) } + task jalviewjs { group "JalviewJS" description "Build the site" @@ -1805,46 +1907,53 @@ task jalviewjs { } + task jalviewjsIDE_CopyTransferSiteJs(type: Copy) { from "${jalviewDir}/${jalviewjsTransferSiteJsDir}" into "${jalviewDir}/${jalviewjsSiteDir}" } + task jalviewjsIDE_j2sFile { group "00 JalviewJS in Eclipse" description "Creates the .j2s file" dependsOn jalviewjsCreateJ2sSettings } + task jalviewjsIDE_AssembleSite { group "00 JalviewJS in Eclipse" description "Assembles the Eclipse transpiled site and unzips supporting zipfiles" dependsOn jalviewjsIDE_CopyTransferSiteJs - dependsOn jalviewjsPrepareSite + dependsOn jalviewjsNoTranspilePrepareSite } + task jalviewjsIDE_SiteClean { group "00 JalviewJS in Eclipse" description "Deletes the Eclipse transpiled site" dependsOn cleanJalviewjsSite } + task jalviewjsIDE_Server { group "00 JalviewJS in Eclipse" description "Starts a webserver on localhost to test the website" dependsOn jalviewjsServer } + // buildship runs this at import task eclipseSynchronizationTask { dependsOn eclipseSetup dependsOn jalviewjsIDE_j2sFile } + // buildship runs this at build time task eclipseAutoBuildTask { - dependsOn jalviewjsSyncTransferSiteJs - dependsOn jalviewjsPrepareSite + dependsOn jalviewjsNoTranspileSyncTransferSiteJs + dependsOn jalviewjsNoTranspilePrepareSite } @@ -1881,7 +1990,7 @@ def jalviewjsCallCore(FileCollection list, String prefixFile, String suffixFile, t.replaceAll("Class__","Clazz._") coreFile.append( t ) } else { - msg = "...file "+f.getPath()+" does not exist, skipping" + msg = "...file '"+f.getPath()+"' does not exist, skipping" println(msg) logOutFile.append(msg+"\n") } @@ -1927,30 +2036,13 @@ def jalviewjsCallCore(FileCollection list, String prefixFile, String suffixFile, logOutFile.append(msg+"\n") } -task jalviewjsBuildJMolCore { - dependsOn jalviewjsTranspile - dependsOn jalviewjsTransferUnzipLib - dependsOn jalviewjsSitePath - - def j2sDir = "${jalviewDir}/${jalviewjsTransferSiteJsDir}/${jalviewjs_j2s_subdir}" - def jsDir = "${jalviewDir}/${jalviewjsTransferSiteLibDir}/${jalviewjs_js_subdir}" - def outputDir = "${jalviewDir}/${jalviewjsTransferSiteCoreDir}/${jalviewjs_j2s_subdir}/core" - def prefixFile = "${jsDir}/core/coretop2.js" - def suffixFile = "${jsDir}/core/corebottom2.js" - - inputs.file prefixFile - inputs.file suffixFile - -} - -task jalviewjsBuildStevesoftCore { - dependsOn jalviewjsTranspile - dependsOn jalviewjsTransferUnzipLib +task jalviewjsNoTranspileBuildAllCores { dependsOn jalviewjsSitePath + dependsOn jalviewjsTransferUnzipSwingJs def j2sDir = "${jalviewDir}/${jalviewjsTransferSiteJsDir}/${jalviewjs_j2s_subdir}" - def jsDir = "${jalviewDir}/${jalviewjsTransferSiteLibDir}/${jalviewjs_js_subdir}" + def jsDir = "${jalviewDir}/${jalviewjsTransferSiteSwingJsDir}/${jalviewjs_js_subdir}" def outputDir = "${jalviewDir}/${jalviewjsTransferSiteCoreDir}/${jalviewjs_j2s_subdir}/core" def prefixFile = "${jsDir}/core/coretop2.js" def suffixFile = "${jsDir}/core/corebottom2.js" @@ -1958,61 +2050,74 @@ task jalviewjsBuildStevesoftCore { inputs.file prefixFile inputs.file suffixFile + def classlistFiles = [] + // add the classlists found int the jalviewjs_classlists_dir + fileTree(dir: "${jalviewDir}/${jalviewjs_classlists_dir}", include: "*.txt").each { + file -> + def name = file.getName() - ".txt" + classlistFiles += [ + 'file': file, + 'name': name + ] + } -} - -task jalviewjsBuildClasslistCores { - group "JalviewJS" - description "Build the core js lib closures listed in the classlists dir" + // _jmol and _jalview cores. Add any other peculiar classlist.txt files here + classlistFiles += [ 'file': file("${jalviewDir}/${jalviewjs_classlist_jmol}"), 'name': "_jvjmol" ] + classlistFiles += [ 'file': file("${jalviewDir}/${jalviewjs_classlist_jalview}"), 'name': "_jalview" ] - dependsOn jalviewjsSitePath - dependsOn jalviewjsTransferUnzipLib - dependsOn jalviewjsTranspile + def classlists = [] - def j2sDir = "${jalviewDir}/${jalviewjsTransferSiteJsDir}/${jalviewjs_j2s_subdir}" - def jsDir = "${jalviewDir}/${jalviewjsTransferSiteLibDir}/${jalviewjs_js_subdir}" - def outputDir = "${jalviewDir}/${jalviewjsTransferSiteCoreDir}/${jalviewjs_j2s_subdir}/core" - def prefixFile = "${jsDir}/core/coretop2.js" - def suffixFile = "${jsDir}/core/corebottom2.js" + classlistFiles.each { + hash -> - inputs.file prefixFile - inputs.file suffixFile - - def classlists = [] - fileTree(dir: "${jalviewDir}/${jalviewjs_classlists_dir}", include: "*.txt").each { - file -> - def name = file.getName() - ".txt" + def file = hash['file'] + if (! file.exists()) { + println("...classlist file '"+file.getPath()+"' does not exist, skipping") + return false // this is a "continue" in groovy .each closure + } + def name = hash['name'] + if (name == null) { + name = file.getName() - ".txt" + } def filelist = [] file.eachLine { line -> - filelist += line + filelist += line } def list = fileTree(dir: j2sDir, includes: filelist) - def coreFileName = "core${name}.js" - def jsfile = "${outputDir}/${coreFileName}" - def coreZFileName = "core${name}.z.js" - def zjsfile = "${outputDir}/${coreZFileName}" + def jsfile = "${outputDir}/core${name}.js" + def zjsfile = "${outputDir}/core${name}.z.js" classlists += [ - 'jsfile': jsfile, - 'zjsfile': zjsfile, - 'list': list + 'jsfile': jsfile, + 'zjsfile': zjsfile, + 'list': list ] inputs.file(file) inputs.files(list) outputs.file(jsfile) outputs.file(zjsfile) - } - + } + + // _stevesoft core. add any cores without a classlist here (and the inputs and outputs) + def stevesoftClasslist = [ + 'jsfile': "${outputDir}/core_stevesoft.js", + 'zjsfile': "${outputDir}/core_stevesoft.z.js", + 'list': fileTree(dir: j2sDir, include: "com/stevesoft/pat/**/*.js") + ] + classlists += stevesoftClasslist + inputs.files(stevesoftClasslist['list']) + outputs.file(stevesoftClasslist['jsfile']) + outputs.file(stevesoftClasslist['zjsfile']) doFirst { def logOutFile = file("${jalviewDirAbsolutePath}/${jalviewjsBuildDir}/${jalviewjs_j2s_closure_stdout}") logOutFile.getParentFile().mkdirs() logOutFile.createNewFile() - logOutFile.write(getDate("yyyy-MM-dd HH:mm:ss")+" jalviewjsBuildAllCores\n----\n") + logOutFile.write(getDate("yyyy-MM-dd HH:mm:ss")+" jalviewjsNoTranspileBuildAllCores\n----\n") classlists.each { jalviewjsCallCore(it.list, prefixFile, suffixFile, it.jsfile, it.zjsfile, logOutFile, jalviewjs_j2s_to_console.equals("true")) @@ -2021,12 +2126,25 @@ task jalviewjsBuildClasslistCores { } + +jalviewjsNoTranspileBuildAllCores.mustRunAfter jalviewjsTranspile + + task jalviewjsBuildAllCores { - dependsOn jalviewjsBuildJMolCore - dependsOn jalviewjsBuildStevesoftCore - dependsOn jalviewjsBuildClasslistCores + group "JalviewJS" + description "Build the core js lib closures listed in the classlists dir" + dependsOn jalviewjsTranspile + dependsOn jalviewjsNoTranspileBuildAllCores } + +task jalviewjsIDE_BuildAllCores { + group "00 JalviewJS in Eclipse" + description "Build the core js lib closures listed in the classlists dir" + dependsOn jalviewjsNoTranspileBuildAllCores +} + + task jalviewjsPublishCoreTemplate { dependsOn jalviewjsBuildAllCores } diff --git a/gradle.properties b/gradle.properties index 444d333..243ba26 100644 --- a/gradle.properties +++ b/gradle.properties @@ -3,6 +3,8 @@ jalviewDir = . #JAVA_VERSION = 1.8 JAVA_VERSION = 11 +ECLIPSE_DEV = false + sourceDir = src #sourceDir = utils/jalviewjs/test/src @@ -156,6 +158,8 @@ jalviewjs_j2s_plugin = swingjs/net.sf.j2s.core.jar jalviewjs_libjs_dir = utils/jalviewjs/libjs jalviewjs_site_resource_dir = utils/jalviewjs/site-resources jalviewjs_classlists_dir = utils/jalviewjs/classlists +jalviewjs_classlist_jmol = utils/jalviewjs/_j2sclasslist_jmol.txt +jalviewjs_classlist_jalview = utils/jalviewjs/_j2sclasslist.txt jalviewjs_j2s_settings = .j2s #jalviewjs_eclipse_workspace = ~/tmp/eclipse-workspace # these 3 files/dirs found in build/jalviewjs diff --git a/utils/jalviewjs/_j2sclasslist.txt b/utils/jalviewjs/_j2sclasslist.txt index e35111e..425e51f 100644 --- a/utils/jalviewjs/_j2sclasslist.txt +++ b/utils/jalviewjs/_j2sclasslist.txt @@ -1,35 +1,328 @@ -java/applet/Applet.js +jalview/analysis/AAFrequency.js +jalview/analysis/AlignSeq.js +jalview/analysis/AlignmentAnnotationUtils.js +jalview/analysis/AlignmentUtils.js +jalview/analysis/AlignmentSorter.js +jalview/analysis/AnnotationSorter.js +jalview/analysis/Conservation.js +jalview/analysis/CrossRef.js +jalview/analysis/NJTree.js +jalview/analysis/SeqsetUtils.js +jalview/analysis/SequenceIdMatcher.js +jalview/analysis/TreeBuilder.js +jalview/analysis/TreeModel.js +jalview/analysis/scoremodels/DistanceScoreModel.js +jalview/analysis/scoremodels/FeatureDistanceModel.js +jalview/analysis/scoremodels/PIDModel.js +jalview/analysis/scoremodels/ScoreMatrix.js +jalview/analysis/scoremodels/ScoreModels.js +jalview/analysis/scoremodels/SimilarityParams.js +jalview/analysis/scoremodels/SimilarityScoreModel.js +jalview/api/AlignCalcManagerI.js +jalview/api/AlignCalcWorkerI.js +jalview/api/AlignViewControllerGuiI.js +jalview/api/AlignViewControllerI.js +jalview/api/AlignFrameI.js +jalview/api/AlignViewportI.js +jalview/api/AlignmentViewPanel.js +jalview/api/BuildDetailsI.js +jalview/api/FeatureColourI.js +jalview/api/FeatureRenderer.js +jalview/api/FeaturesDisplayedI.js +jalview/api/JalviewApp.js +jalview/api/OOMHandlerI.js +jalview/api/SequenceRenderer.js +jalview/api/StructureSelectionManagerProvider.js +jalview/api/ViewStyleI.js +jalview/api/analysis/PairwiseScoreModelI.js +jalview/api/analysis/ScoreModelI.js +jalview/api/analysis/SimilarityParamsI.js +jalview/bin/AppletParams.js +jalview/bin/ApplicationSingletonProvider.js +jalview/bin/ArgsParser.js +jalview/bin/BuildDetails.js +jalview/bin/Cache.js +jalview/bin/Jalview.js +jalview/bin/JalviewAppLoader.js +jalview/commands/CommandI.js +jalview/commands/OrderCommand.js +jalview/controller/AlignViewController.js +jalview/datamodel/ASequence.js +jalview/datamodel/ASequenceI.js +jalview/datamodel/Alignment.js +jalview/datamodel/AlignmentAnnotation.js +jalview/datamodel/AlignmentI.js +jalview/datamodel/AlignmentView.js +jalview/datamodel/AnnotatedCollectionI.js +jalview/datamodel/Annotation.js +jalview/datamodel/BinaryNode.js +jalview/datamodel/CigarArray.js +jalview/datamodel/CigarBase.js +jalview/datamodel/CigarSimple.js +jalview/datamodel/ColumnSelection.js +jalview/datamodel/ContiguousI.js +jalview/datamodel/DBRefSource.js +jalview/datamodel/HiddenColumns.js +jalview/datamodel/HiddenColumnsCursor.js +jalview/datamodel/HiddenCursorPosition.js +jalview/datamodel/HiddenSequences.js +jalview/datamodel/PDBEntry.js +jalview/datamodel/Profile.js +jalview/datamodel/ProfileI.js +jalview/datamodel/Profiles.js +jalview/datamodel/ProfilesI.js +jalview/datamodel/Range.js +jalview/datamodel/RangeIterator.js +jalview/datamodel/ResidueCount.js +jalview/datamodel/SearchResults.js +jalview/datamodel/SearchResultsI.js +jalview/datamodel/SeqCigar.js +jalview/datamodel/Sequence.js +jalview/datamodel/SequenceCollectionI.js +jalview/datamodel/SequenceCursor.js +jalview/datamodel/SequenceFeature.js +jalview/datamodel/SequenceGroup.js +jalview/datamodel/SequenceI.js +jalview/datamodel/SequenceNode.js +jalview/datamodel/features/FeatureLocationI.js +jalview/datamodel/features/FeatureMatcher.js +jalview/datamodel/features/FeatureMatcherI.js +jalview/datamodel/features/FeatureMatcherSet.js +jalview/datamodel/features/FeatureMatcherSetI.js +jalview/datamodel/features/FeatureStore.js +jalview/datamodel/features/FeatureStoreI.js +jalview/datamodel/features/FeatureStoreJS.js + +jalview/datamodel/features/SequenceFeatures.js +jalview/datamodel/features/SequenceFeaturesI.js +jalview/gui/AlignFrame.js +jalview/gui/AlignViewport.js +jalview/gui/AlignmentPanel.js +jalview/gui/AnnotationLabels.js +jalview/gui/AnnotationPanel.js +jalview/gui/CalculationChooser.js +jalview/gui/ColourMenuHelper.js +jalview/gui/ComboBoxTooltipRenderer.js +jalview/gui/Desktop.js +jalview/gui/FeatureRenderer.js +jalview/gui/IProgressIndicator.js +jalview/gui/IdCanvas.js +jalview/gui/IdPanel.js +jalview/gui/IdwidthAdjuster.js +jalview/gui/JalviewChangeSupport.js +jalview/gui/JvSwingUtils.js +jalview/gui/PaintRefresher.js +jalview/gui/PopupMenu.js +jalview/gui/Preferences.js +jalview/gui/ProgressBar.js +jalview/gui/ScalePanel.js +jalview/gui/SeqCanvas.js +jalview/gui/SeqPanel.js +jalview/gui/SequenceRenderer.js +jalview/gui/TreeCanvas.js +jalview/gui/TreePanel.js +jalview/gui/ViewSelectionMenu.js +jalview/io/AlignFile.js +jalview/io/AlignmentFileReaderI.js +jalview/io/AlignmentFileWriterI.js +jalview/io/AppletFormatAdapter.js +jalview/io/DataSourceType.js +jalview/io/FileFormat.js +jalview/io/FileFormatI.js +jalview/io/FileFormats.js +jalview/io/FileLoader.js +jalview/io/FileParse.js +jalview/io/IdentifyFile.js +jalview/io/NewickFile.js +jalview/io/PIRFile.js +jalview/io/ScoreMatrixFile.js +jalview/io/SequenceAnnotationReport.js +jalview/javascript/JalviewLiteJSApi.js +jalview/javascript/log4j/ConsoleAppender.js +jalview/javascript/log4j/Layout.js +jalview/javascript/log4j/Level.js +jalview/javascript/log4j/Logger.js +jalview/javascript/log4j/Priority.js +jalview/javascript/log4j/SimpleLayout.js +jalview/javascript/log4j/spi/OptionHandler.js +jalview/jbgui/GAlignFrame.js +jalview/jbgui/GAlignmentPanel.js +jalview/jbgui/GDesktop.js +jalview/jbgui/GPreferences.js +jalview/jbgui/GTreePanel.js +jalview/math/Matrix.js +jalview/math/MatrixI.js +jalview/project/Jalview2XML.js +jalview/renderer/AnnotationRenderer.js +jalview/renderer/AwtRenderPanelI.js +jalview/renderer/ResidueColourFinder.js +jalview/renderer/ResidueShader.js +jalview/renderer/ResidueShaderI.js +jalview/renderer/ScaleRenderer.js +jalview/renderer/seqfeatures/FeatureRenderer.js +jalview/schemes/Blosum62ColourScheme.js +jalview/schemes/BuriedColourScheme.js +jalview/schemes/ClustalxColourScheme.js +jalview/schemes/ColourSchemeI.js +jalview/schemes/ColourSchemeProperty.js +jalview/schemes/ColourSchemes.js +jalview/schemes/ColourSchemeLoader.js +jalview/schemes/UserColourScheme.js +jalview/schemes/Consensus.js +jalview/schemes/FeatureColour.js +jalview/schemes/HelixColourScheme.js +jalview/schemes/HydrophobicColourScheme.js +jalview/schemes/JalviewColourScheme.js +jalview/schemes/NucleotideColourScheme.js +jalview/schemes/PIDColourScheme.js +jalview/schemes/PurinePyrimidineColourScheme.js +jalview/schemes/RNAHelicesColour.js +jalview/schemes/ResidueColourScheme.js +jalview/schemes/ResidueProperties.js +jalview/schemes/ScoreColourScheme.js +jalview/schemes/StrandColourScheme.js +jalview/schemes/TCoffeeColourScheme.js +jalview/schemes/TaylorColourScheme.js +jalview/schemes/TurnColourScheme.js +jalview/schemes/UserColourScheme.js +jalview/schemes/ZappoColourScheme.js +jalview/structure/CommandListener.js +jalview/structure/SelectionListener.js +jalview/structure/SelectionSource.js +jalview/structure/SequenceListener.js +jalview/structure/StructureImportSettings.js +jalview/structure/StructureSelectionManager.js +jalview/structure/VamsasSource.js +jalview/urls/CustomUrlProvider.js +jalview/urls/IdOrgSettings.js +jalview/urls/IdentifiersUrlProvider.js +jalview/urls/UrlLinkDisplay.js +jalview/urls/UrlLinkTableModel.js +jalview/urls/UrlProvider.js +jalview/urls/UrlProviderImpl.js +jalview/urls/api/UrlProviderFactoryI.js +jalview/urls/api/UrlProviderI.js +jalview/urls/desktop/DesktopUrlProviderFactory.js +jalview/util/ColorUtils.js +jalview/util/Comparison.js +jalview/util/DBRefUtils.js +jalview/util/Format.js +jalview/util/MessageManager.js +jalview/util/Platform.js +jalview/util/QuickSort.js +jalview/util/StringUtils.js +jalview/util/UrlLink.js +jalview/util/jarInputStreamProvider.js +jalview/util/matcher/Condition.js +jalview/util/matcher/Matcher.js +jalview/util/matcher/MatcherI.js +jalview/viewmodel/AlignmentViewport.js +jalview/viewmodel/ViewportListenerI.js +jalview/viewmodel/ViewportProperties.js +jalview/viewmodel/ViewportRanges.js +jalview/viewmodel/seqfeatures/FeatureRendererModel.js +jalview/viewmodel/seqfeatures/FeatureRendererSettings.js +jalview/viewmodel/seqfeatures/FeaturesDisplayed.js +jalview/viewmodel/styles/ViewStyle.js +jalview/workers/AlignCalcManager.js +jalview/workers/AlignCalcWorker.js +jalview/workers/ConsensusThread.js +jalview/workers/ConservationThread.js +jalview/ws/sifts/SiftsSettings.js +jalview/xml/binding/jalview/Annotation.js +jalview/xml/binding/jalview/AnnotationElement.js +jalview/xml/binding/jalview/Feature.js +jalview/xml/binding/jalview/FeatureMatcher.js +jalview/xml/binding/jalview/FeatureMatcherSet.js +jalview/xml/binding/jalview/FilterBy.js +jalview/xml/binding/jalview/JalviewModel.js +jalview/xml/binding/jalview/NoValueColour.js +jalview/xml/binding/jalview/Pdbentry.js +jalview/xml/binding/jalview/Sequence.js +jalview/xml/binding/jalview/SequenceSet.js +jalview/xml/binding/jalview/SequenceType.js +jalview/xml/binding/jalview/VAMSAS.js +jalview/xml/binding/jalview/WebServiceParameterSet.js java/applet/AppletContext.js java/applet/AppletStub.js java/applet/JSApplet.js -java/awt/ActiveEvent.js -java/awt/Adjustable.js java/awt/AWTEvent.js java/awt/AWTEventMulticaster.js java/awt/AWTKeyStroke.js +java/awt/ActiveEvent.js +java/awt/Adjustable.js +java/awt/AlphaComposite.js java/awt/BasicStroke.js java/awt/BorderLayout.js -java/awt/Button.js java/awt/Color.js -java/awt/color/ColorSpace.js java/awt/Component.js java/awt/ComponentOrientation.js -java/awt/ContainerOrderFocusTraversalPolicy.js +java/awt/Composite.js java/awt/Container.js +java/awt/ContainerOrderFocusTraversalPolicy.js java/awt/Cursor.js java/awt/DefaultFocusTraversalPolicy.js java/awt/DefaultKeyboardFocusManager.js java/awt/Dialog.js java/awt/Dimension.js +java/awt/EventDispatchThread.js +java/awt/EventFilter.js +java/awt/EventQueue.js +java/awt/EventQueueItem.js +java/awt/FlowLayout.js +java/awt/FocusTraversalPolicy.js +java/awt/Font.js +java/awt/FontMetrics.js +java/awt/GraphicsCallback.js +java/awt/GraphicsConfiguration.js +java/awt/GraphicsDevice.js +java/awt/GraphicsEnvironment.js +java/awt/GridLayout.js +java/awt/Image.js +java/awt/Insets.js +java/awt/ItemSelectable.js +java/awt/JSComponent.js +java/awt/JSDialog.js +java/awt/JSFrame.js +java/awt/JSPanel.js +java/awt/KeyEventDispatcher.js +java/awt/KeyEventPostProcessor.js +java/awt/KeyboardFocusManager.js +java/awt/LayoutManager.js +java/awt/LayoutManager2.js +java/awt/LightweightDispatcher.js +java/awt/Paint.js +java/awt/Point.js +java/awt/Queue.js +java/awt/Rectangle.js +java/awt/RenderingHints.js +java/awt/SentEvent.js +java/awt/Shape.js +java/awt/Stroke.js +java/awt/Toolkit.js +java/awt/Transparency.js +java/awt/VKCollection.js +java/awt/Window.js +java/awt/color/ColorSpace.js +java/awt/datatransfer/ClipboardOwner.js +java/awt/datatransfer/FlavorMap.js +java/awt/datatransfer/FlavorTable.js +java/awt/datatransfer/SystemFlavorMap.js +java/awt/dnd/DropTarget.js +java/awt/dnd/DropTargetContext.js +java/awt/dnd/DropTargetListener.js java/awt/dnd/peer/DropTargetPeer.js +java/awt/event/AWTEventListener.js +java/awt/event/ActionEvent.js java/awt/event/ActionListener.js java/awt/event/AdjustmentEvent.js java/awt/event/AdjustmentListener.js -java/awt/event/AWTEventListener.js java/awt/event/ComponentAdapter.js java/awt/event/ComponentEvent.js java/awt/event/ComponentListener.js +java/awt/event/ContainerEvent.js java/awt/event/ContainerListener.js +java/awt/event/FocusAdapter.js java/awt/event/FocusEvent.js java/awt/event/FocusListener.js java/awt/event/HierarchyBoundsListener.js @@ -39,9 +332,13 @@ java/awt/event/InputMethodListener.js java/awt/event/InvocationEvent.js java/awt/event/ItemEvent.js java/awt/event/ItemListener.js +java/awt/event/KeyAdapter.js +java/awt/event/KeyEvent.js java/awt/event/KeyListener.js +java/awt/event/MouseAdapter.js java/awt/event/MouseEvent.js java/awt/event/MouseListener.js +java/awt/event/MouseMotionAdapter.js java/awt/event/MouseMotionListener.js java/awt/event/MouseWheelListener.js java/awt/event/TextListener.js @@ -50,103 +347,124 @@ java/awt/event/WindowEvent.js java/awt/event/WindowFocusListener.js java/awt/event/WindowListener.js java/awt/event/WindowStateListener.js -java/awt/EventDispatchThread.js -java/awt/EventFilter.js -java/awt/EventQueue.js -java/awt/EventQueueItem.js -java/awt/FlowLayout.js -java/awt/FocusTraversalPolicy.js -java/awt/Font.js java/awt/font/FontRenderContext.js -java/awt/FontMetrics.js -java/awt/Frame.js java/awt/geom/AffineTransform.js java/awt/geom/Dimension2D.js java/awt/geom/Path2D.js java/awt/geom/PathIterator.js java/awt/geom/Point2D.js +java/awt/geom/RectIterator.js java/awt/geom/Rectangle2D.js java/awt/geom/RectangularShape.js -java/awt/geom/RectIterator.js -java/awt/GraphicsCallback.js -java/awt/GraphicsConfiguration.js -java/awt/GraphicsDevice.js -java/awt/GraphicsEnvironment.js +java/awt/image/BufferedImage.js +java/awt/image/ColorModel.js +java/awt/image/DataBuffer.js +java/awt/image/DataBufferInt.js +java/awt/image/DirectColorModel.js java/awt/image/ImageObserver.js -java/awt/Insets.js -java/awt/ItemSelectable.js -java/awt/JSComponent.js -java/awt/JSDialog.js -java/awt/JSFrame.js -java/awt/JSPanel.js -java/awt/KeyboardFocusManager.js -java/awt/KeyEventDispatcher.js -java/awt/KeyEventPostProcessor.js -java/awt/Label.js -java/awt/LayoutManager.js -java/awt/LayoutManager2.js -java/awt/LightweightDispatcher.js -java/awt/Paint.js -java/awt/Panel.js +java/awt/image/PackedColorModel.js +java/awt/image/Raster.js +java/awt/image/RenderedImage.js +java/awt/image/SampleModel.js +java/awt/image/SinglePixelPackedSampleModel.js +java/awt/image/WritableRaster.js java/awt/peer/ComponentPeer.js java/awt/peer/ContainerPeer.js java/awt/peer/FramePeer.js java/awt/peer/KeyboardFocusManagerPeer.js java/awt/peer/LightweightPeer.js java/awt/peer/WindowPeer.js -java/awt/Point.js -java/awt/Queue.js -java/awt/Rectangle.js -java/awt/RenderingHints.js -java/awt/Scrollbar.js -java/awt/ScrollPane.js -java/awt/Shape.js -java/awt/Stroke.js -java/awt/TextArea.js -java/awt/TextComponent.js -java/awt/TextField.js -java/awt/Toolkit.js -java/awt/Transparency.js -java/awt/Window.js +java/awt/print/Printable.js java/beans/ChangeListenerMap.js java/beans/PropertyChangeEvent.js java/beans/PropertyChangeListener.js java/beans/PropertyChangeSupport.js +java/io/BufferedInputStream.js +java/io/BufferedReader.js +java/io/ByteArrayInputStream.js +java/io/Closeable.js +java/io/File.js +java/io/FileDescriptor.js +java/io/FileInputStream.js +java/io/FileReader.js +java/io/FileSystem.js +java/io/FilterInputStream.js +java/io/InputStream.js +java/io/InputStreamReader.js +java/io/PushbackInputStream.js +java/io/Reader.js java/lang/AbstractStringBuilder.js +java/lang/AutoCloseable.js java/lang/Class.js java/lang/Enum.js java/lang/Iterable.js -java/lang/reflect/Constructor.js -java/lang/reflect/Method.js +java/lang/Readable.js +java/lang/Runtime.js java/lang/StringBuffer.js java/lang/StringBuilder.js java/lang/Thread.js java/lang/ThreadGroup.js +java/lang/reflect/Constructor.js +java/lang/reflect/Method.js +java/math/BigDecimal.js +java/math/BigInteger.js +java/math/MathContext.js java/math/RoundingMode.js +java/net/HttpURLConnection.js +java/net/MalformedURLException.js java/net/URL.js +java/net/URLConnection.js +java/net/URLDecoder.js +java/net/URLStreamHandler.js java/net/URLStreamHandlerFactory.js +java/nio/Bits.js +java/nio/Buffer.js +java/nio/ByteBuffer.js +java/nio/ByteOrder.js +java/nio/CharBuffer.js +java/nio/HeapByteBuffer.js +java/nio/HeapCharBuffer.js +java/nio/charset/Charset.js +java/nio/charset/CharsetDecoder.js +java/nio/charset/CoderResult.js +java/nio/charset/CodingErrorAction.js +java/security/AccessControlContext.js +java/security/AccessController.js +java/security/PrivilegedAction.js +java/security/PrivilegedExceptionAction.js +java/text/AttributedCharacterIterator.js java/text/CharacterIterator.js +java/text/DateFormat.js +java/text/DateFormatSymbols.js java/text/DecimalFormat.js java/text/DecimalFormatSymbols.js java/text/DigitList.js java/text/FieldPosition.js java/text/Format.js +java/text/MessageFormat.js java/text/NumberFormat.js +java/text/SimpleDateFormat.js java/util/AbstractCollection.js java/util/AbstractList.js java/util/AbstractMap.js +java/util/AbstractQueue.js java/util/AbstractSequentialList.js java/util/AbstractSet.js +java/util/ArrayDeque.js java/util/ArrayList.js java/util/Arrays.js +java/util/BitSet.js +java/util/Calendar.js java/util/Collection.js java/util/Collections.js java/util/Comparator.js java/util/Deque.js java/util/Dictionary.js +java/util/DualPivotQuicksort.js java/util/Enumeration.js java/util/EventListener.js java/util/EventObject.js +java/util/GregorianCalendar.js java/util/HashMap.js java/util/HashSet.js java/util/Hashtable.js @@ -155,26 +473,75 @@ java/util/Iterator.js java/util/LinkedHashMap.js java/util/LinkedList.js java/util/List.js +java/util/ListIterator.js java/util/ListResourceBundle.js java/util/Locale.js java/util/Map.js +java/util/NavigableMap.js +java/util/NavigableSet.js java/util/Objects.js +java/util/Properties.js +java/util/PropertyResourceBundle.js java/util/Queue.js -java/util/Random.js java/util/RandomAccess.js java/util/ResourceBundle.js java/util/Set.js +java/util/SortedMap.js +java/util/SortedSet.js +java/util/StringTokenizer.js java/util/TimSort.js +java/util/TimeZone.js +java/util/TreeMap.js +java/util/TreeSet.js java/util/Vector.js +java/util/concurrent/AbstractExecutorService.js +java/util/concurrent/BlockingQueue.js +java/util/concurrent/ConcurrentHashMap.js +java/util/concurrent/ConcurrentMap.js +java/util/concurrent/Executor.js +java/util/concurrent/ExecutorService.js +java/util/concurrent/Executors.js +java/util/concurrent/LinkedBlockingQueue.js +java/util/concurrent/RejectedExecutionHandler.js +java/util/concurrent/Semaphore.js +java/util/concurrent/ThreadFactory.js +java/util/concurrent/ThreadPoolExecutor.js +java/util/concurrent/TimeUnit.js +java/util/concurrent/atomic/AtomicBoolean.js +java/util/concurrent/atomic/AtomicInteger.js +java/util/concurrent/locks/AbstractOwnableSynchronizer.js +java/util/concurrent/locks/AbstractQueuedSynchronizer.js +java/util/concurrent/locks/Condition.js +java/util/concurrent/locks/Lock.js +java/util/concurrent/locks/ReadWriteLock.js +java/util/concurrent/locks/ReentrantLock.js +java/util/concurrent/locks/ReentrantReadWriteLock.js +java/util/jar/JarEntry.js +java/util/jar/JarInputStream.js +java/util/logging/Level.js +java/util/logging/Logger.js +java/util/regex/MatchResult.js +java/util/regex/Matcher.js +java/util/regex/Pattern.js +java/util/zip/CRC32.js +java/util/zip/Inflater.js +java/util/zip/InflaterInputStream.js +java/util/zip/ZipConstants.js +java/util/zip/ZipEntry.js +java/util/zip/ZipInputStream.js +javajs/api/GenericLineReader.js javajs/api/JSFunction.js +javajs/api/JSONEncodable.js +javajs/util/AU.js javajs/util/AjaxURLConnection.js +javajs/util/AjaxURLStreamHandler.js javajs/util/AjaxURLStreamHandlerFactory.js -javajs/util/AU.js +javajs/util/Encoding.js javajs/util/JSThread.js javajs/util/Lst.js javajs/util/PT.js +javajs/util/Rdr.js javajs/util/SB.js -javax/net/ssl/HttpsUrlConnection.js javax/swing/AbstractAction.js javax/swing/AbstractButton.js javax/swing/AbstractListModel.js @@ -182,13 +549,6 @@ javax/swing/Action.js javax/swing/ActionMap.js javax/swing/AncestorNotifier.js javax/swing/ArrayTable.js -javax/swing/border/AbstractBorder.js -javax/swing/border/BevelBorder.js -javax/swing/border/Border.js -javax/swing/border/CompoundBorder.js -javax/swing/border/EmptyBorder.js -javax/swing/border/EtchedBorder.js -javax/swing/border/LineBorder.js javax/swing/BorderFactory.js javax/swing/BoundedRangeModel.js javax/swing/BoxLayout.js @@ -196,24 +556,14 @@ javax/swing/ButtonGroup.js javax/swing/ButtonModel.js javax/swing/ClientPropertyKey.js javax/swing/ComboBoxModel.js +javax/swing/ComponentInputMap.js javax/swing/DefaultBoundedRangeModel.js javax/swing/DefaultButtonModel.js javax/swing/DefaultComboBoxModel.js +javax/swing/DefaultDesktopManager.js +javax/swing/DefaultListCellRenderer.js javax/swing/DefaultSingleSelectionModel.js -javax/swing/DropMode.js -javax/swing/event/AncestorEvent.js -javax/swing/event/AncestorListener.js -javax/swing/event/CaretEvent.js -javax/swing/event/CaretListener.js -javax/swing/event/ChangeEvent.js -javax/swing/event/ChangeListener.js -javax/swing/event/DocumentEvent.js -javax/swing/event/DocumentListener.js -javax/swing/event/EventListenerList.js -javax/swing/event/ListDataEvent.js -javax/swing/event/ListDataListener.js -javax/swing/event/UndoableEditEvent.js -javax/swing/event/UndoableEditListener.js +javax/swing/DesktopManager.js javax/swing/FocusManager.js javax/swing/InternalFrameFocusTraversalPolicy.js javax/swing/LayoutComparator.js @@ -228,7 +578,10 @@ javax/swing/JCheckBox.js javax/swing/JCheckBoxMenuItem.js javax/swing/JComboBox.js javax/swing/JComponent.js +javax/swing/JDesktopPane.js +javax/swing/JDialog.js javax/swing/JFrame.js +javax/swing/JInternalFrame.js javax/swing/JLabel.js javax/swing/JLayeredPane.js javax/swing/JMenu.js @@ -236,124 +589,182 @@ javax/swing/JMenuBar.js javax/swing/JMenuItem.js javax/swing/JPanel.js javax/swing/JPopupMenu.js +javax/swing/JProgressBar.js +javax/swing/JRadioButton.js javax/swing/JRadioButtonMenuItem.js javax/swing/JRootPane.js javax/swing/JScrollBar.js javax/swing/JScrollPane.js javax/swing/JSeparator.js -javax/swing/JTextArea.js -javax/swing/JTextField.js +javax/swing/JTabbedPane.js javax/swing/JToggleButton.js +javax/swing/JToolTip.js javax/swing/JViewport.js -javax/swing/KeyboardManager.js +javax/swing/JWindow.js javax/swing/KeyStroke.js +javax/swing/KeyboardManager.js +javax/swing/ListCellRenderer.js javax/swing/ListModel.js javax/swing/LookAndFeel.js javax/swing/MenuElement.js +javax/swing/MenuSelectionManager.js javax/swing/MutableComboBoxModel.js -javax/swing/plaf/ActionMapUIResource.js -javax/swing/plaf/basic/BasicBorders.js -javax/swing/plaf/BorderUIResource.js -javax/swing/plaf/ColorUIResource.js -javax/swing/plaf/ComponentUI.js -javax/swing/plaf/DimensionUIResource.js -javax/swing/plaf/FontUIResource.js -javax/swing/plaf/InputMapUIResource.js -javax/swing/plaf/InsetsUIResource.js -javax/swing/plaf/UIResource.js +javax/swing/Popup.js +javax/swing/PopupFactory.js javax/swing/RepaintManager.js javax/swing/RootPaneContainer.js -javax/swing/Scrollable.js javax/swing/ScrollPaneConstants.js javax/swing/ScrollPaneLayout.js +javax/swing/Scrollable.js javax/swing/SingleSelectionModel.js javax/swing/SizeRequirements.js javax/swing/SwingConstants.js javax/swing/SwingPaintEventDispatcher.js javax/swing/SwingUtilities.js -javax/swing/text/AbstractDocument.js -javax/swing/text/AttributeSet.js -javax/swing/text/Caret.js -javax/swing/text/DefaultCaret.js -javax/swing/text/DefaultEditorKit.js -javax/swing/text/Document.js -javax/swing/text/EditorKit.js -javax/swing/text/Element.js -javax/swing/text/GapContent.js -javax/swing/text/GapVector.js -javax/swing/text/JTextComponent.js -javax/swing/text/MutableAttributeSet.js -javax/swing/text/PlainDocument.js -javax/swing/text/PlainView.js -javax/swing/text/Position.js -javax/swing/text/Segment.js -javax/swing/text/SegmentCache.js -javax/swing/text/SimpleAttributeSet.js -javax/swing/text/Style.js -javax/swing/text/StyleConstants.js 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+sun/util/calendar/CalendarDate.js +sun/util/calendar/CalendarSystem.js +sun/util/calendar/CalendarUtils.js +sun/util/calendar/Gregorian.js +sun/util/calendar/ZoneInfo.js sun/util/resources/LocaleData.js -swingjs/a2s/A2SContainer.js -swingjs/a2s/A2SEvent.js -swingjs/a2s/A2SListener.js -swingjs/a2s/Applet.js -swingjs/a2s/Button.js -swingjs/a2s/Label.js -swingjs/a2s/Panel.js -swingjs/a2s/Scrollbar.js -swingjs/a2s/ScrollPane.js -swingjs/a2s/TextArea.js -swingjs/a2s/TextField.js -swingjs/api/Interface.js -swingjs/api/js/DOMNode.js -swingjs/api/js/HTML5CanvasContext2D.js -swingjs/api/js/JSInterface.js -swingjs/jquery/JQueryUI.js swingjs/JSApp.js swingjs/JSAppletThread.js swingjs/JSAppletViewer.js +swingjs/JSCharSet.js +swingjs/JSDummyApplet.js swingjs/JSFocusPeer.js swingjs/JSFontMetrics.js swingjs/JSFrameViewer.js swingjs/JSGraphics2D.js +swingjs/JSGraphicsCompositor.js swingjs/JSGraphicsConfiguration.js swingjs/JSGraphicsEnvironment.js +swingjs/JSKeyEvent.js +swingjs/JSMenuManager.js swingjs/JSMouse.js -swingjs/JSNullComponentPeer.js swingjs/JSScreenDevice.js swingjs/JSThreadGroup.js swingjs/JSToolkit.js swingjs/JSUtil.js +swingjs/a2s/Dialog.js +swingjs/api/Interface.js +swingjs/api/js/DOMNode.js +swingjs/api/js/HTML5CanvasContext2D.js +swingjs/api/js/JSInterface.js +swingjs/jquery/JQueryUI.js +swingjs/jzlib/Adler32.js +swingjs/jzlib/CRC32.js +swingjs/jzlib/Checksum.js +swingjs/jzlib/InfBlocks.js +swingjs/jzlib/InfCodes.js +swingjs/jzlib/InfTree.js +swingjs/jzlib/Inflate.js +swingjs/jzlib/Inflater.js +swingjs/jzlib/InflaterInputStream.js +swingjs/jzlib/ZStream.js swingjs/plaf/ButtonListener.js swingjs/plaf/DefaultMenuLayout.js swingjs/plaf/HTML5LookAndFeel.js @@ -363,9 +774,12 @@ swingjs/plaf/JSCheckBoxMenuItemUI.js swingjs/plaf/JSCheckBoxUI.js swingjs/plaf/JSComboBoxUI.js swingjs/plaf/JSComponentUI.js +swingjs/plaf/JSDesktopIconUI.js +swingjs/plaf/JSDesktopPaneUI.js swingjs/plaf/JSEventHandler.js swingjs/plaf/JSFrameUI.js swingjs/plaf/JSGraphicsUtils.js +swingjs/plaf/JSInternalFrameUI.js swingjs/plaf/JSLabelUI.js swingjs/plaf/JSLayeredPaneUI.js swingjs/plaf/JSLightweightUI.js @@ -375,6 +789,8 @@ swingjs/plaf/JSMenuUI.js swingjs/plaf/JSPanelUI.js swingjs/plaf/JSPopupMenuSeparatorUI.js swingjs/plaf/JSPopupMenuUI.js +swingjs/plaf/JSPopupUI.js +swingjs/plaf/JSProgressBarUI.js swingjs/plaf/JSRadioButtonMenuItemUI.js swingjs/plaf/JSRadioButtonUI.js swingjs/plaf/JSRootPaneUI.js @@ -382,14 +798,201 @@ swingjs/plaf/JSScrollBarUI.js swingjs/plaf/JSScrollPaneUI.js swingjs/plaf/JSSeparatorUI.js swingjs/plaf/JSSliderUI.js -swingjs/plaf/JSTextAreaUI.js -swingjs/plaf/JSTextFieldUI.js -swingjs/plaf/JSTextUI.js -swingjs/plaf/JSTextViewUI.js +swingjs/plaf/JSTabbedPaneUI.js +swingjs/plaf/JSToolTipUI.js swingjs/plaf/JSViewportUI.js swingjs/plaf/JSWindowUI.js swingjs/plaf/LazyActionMap.js swingjs/plaf/Resizer.js +swingjs/xml/JSJAXBClass.js +swingjs/xml/JSJAXBContext.js +swingjs/xml/JSJAXBContextFactory.js +swingjs/xml/JSJAXBField.js 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